Detailed information    

insolico Bioinformatically predicted

Overview

Name   ssb   Type   Machinery gene
Locus tag   AMS64_RS20975 Genome accession   NZ_CP012504
Coordinates   4571365..4571952 (+) Length   195 a.a.
NCBI ID   WP_058059298.1    Uniprot ID   -
Organism   Aeromonas veronii strain TH0426     
Function   ssDNA binding (predicted from homology)   
DNA processing

Genomic Context

Location: 4566365..4576952
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  AMS64_RS20950 (AMS64_20940) - 4567879..4568400 (-) 522 WP_042080925.1 curlin -
  AMS64_RS20955 (AMS64_20945) - 4568588..4569427 (-) 840 WP_064337426.1 CsgG/HfaB family protein -
  AMS64_RS20960 (AMS64_20950) - 4569435..4569836 (-) 402 WP_064337427.1 curli assembly protein CsgF -
  AMS64_RS20965 (AMS64_20955) - 4569848..4570291 (-) 444 WP_064337428.1 curli production assembly/transport protein CsgE -
  AMS64_RS20970 (AMS64_20960) - 4570291..4570938 (-) 648 WP_042080923.1 LuxR C-terminal-related transcriptional regulator -
  AMS64_RS20975 (AMS64_20965) ssb 4571365..4571952 (+) 588 WP_058059298.1 single-stranded DNA-binding protein Machinery gene
  AMS64_RS20980 (AMS64_20970) - 4572102..4572845 (+) 744 WP_064337429.1 ABC transporter substrate-binding protein -
  AMS64_RS24250 - 4572918..4573043 (-) 126 WP_019445191.1 hypothetical protein -
  AMS64_RS20985 (AMS64_20975) - 4573505..4574407 (+) 903 WP_064337430.1 cation diffusion facilitator family transporter -
  AMS64_RS20990 (AMS64_20980) yjbD 4574554..4574838 (+) 285 WP_005340165.1 DUF3811 domain-containing protein -
  AMS64_RS20995 (AMS64_20985) cspA 4575433..4575645 (+) 213 WP_005316548.1 RNA chaperone/antiterminator CspA -

Sequence

Protein


Download         Length: 195 a.a.        Molecular weight: 21556.09 Da        Isoelectric Point: 5.9301

>NTDB_id=154845 AMS64_RS20975 WP_058059298.1 4571365..4571952(+) (ssb) [Aeromonas veronii strain TH0426]
MASRGINKVILIGNLGQDPEVRYMPSGGAVTNITLATSETWRDKQTGEQKERTEWHRVVFMGKLAEVAGEYLKKGSQVYV
EGKLQTRKWQDQSGQERYTTEVLVDSFTGVMQMLGGRPQGGQGMGQNMGGQSQGSWGQPQQSMPAQQPMNQQRPAPAPQQ
NMQPQGGYGRPAQQPQSAPPVYNEPPMDFDDDIPF

Nucleotide


Download         Length: 588 bp        

>NTDB_id=154845 AMS64_RS20975 WP_058059298.1 4571365..4571952(+) (ssb) [Aeromonas veronii strain TH0426]
ATGGCCAGTCGAGGCATCAATAAAGTCATTCTGATCGGTAACCTCGGGCAAGACCCGGAAGTACGCTACATGCCGAGTGG
CGGTGCTGTGACCAACATTACTCTGGCTACCTCTGAAACTTGGCGCGACAAGCAGACCGGTGAGCAGAAAGAGCGTACCG
AATGGCATCGTGTCGTCTTCATGGGCAAGTTGGCCGAAGTGGCTGGCGAGTACCTGAAGAAGGGCTCCCAGGTCTATGTG
GAAGGCAAACTGCAGACCCGCAAATGGCAAGATCAGAGCGGCCAGGAGCGCTACACCACTGAAGTGCTGGTCGACAGCTT
CACTGGCGTGATGCAGATGCTGGGTGGCCGTCCGCAAGGCGGTCAGGGCATGGGCCAGAACATGGGTGGCCAATCCCAGG
GTAGCTGGGGTCAGCCGCAGCAGAGCATGCCTGCCCAGCAGCCGATGAATCAGCAGCGCCCGGCACCGGCTCCGCAGCAG
AATATGCAGCCGCAAGGCGGTTATGGCCGTCCTGCCCAGCAGCCGCAATCTGCGCCGCCGGTATATAACGAGCCGCCGAT
GGATTTCGACGACGATATCCCGTTCTAA

Domains

Predicted by InterproScan.

Single-strand binding protein family (SSB)

(6-107)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  ssb Vibrio cholerae strain A1552

69.849

100

0.713
  ssb Glaesserella parasuis strain SC1401

53.886

98.974

0.533
  ssb Neisseria gonorrhoeae MS11

46.597

97.949

0.456
  ssb Neisseria meningitidis MC58

46.597

97.949

0.456

Multiple sequence alignment