Detailed information    

insolico Bioinformatically predicted

Overview

Name   ssbA   Type   Machinery gene
Locus tag   AMR84_RS08850 Genome accession   NZ_CP012503
Coordinates   1764859..1765350 (-) Length   163 a.a.
NCBI ID   WP_000609585.1    Uniprot ID   A0AAV3JH34
Organism   Streptococcus agalactiae strain NGBS357     
Function   ssDNA binding (predicted from homology)   
DNA processing

Genomic Context

Location: 1759859..1770350
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  AMR84_RS08830 (AMR84_08840) - 1760742..1761413 (-) 672 WP_000174846.1 DUF1129 domain-containing protein -
  AMR84_RS08835 (AMR84_08845) - 1761438..1762382 (-) 945 WP_000812120.1 magnesium transporter CorA family protein -
  AMR84_RS08840 (AMR84_08850) rpsR 1762552..1762791 (-) 240 WP_000068665.1 30S ribosomal protein S18 -
  AMR84_RS08845 (AMR84_08855) ltrA 1762959..1764278 (-) 1320 WP_000561483.1 group II intron reverse transcriptase/maturase -
  AMR84_RS08850 (AMR84_08860) ssbA 1764859..1765350 (-) 492 WP_000609585.1 single-stranded DNA-binding protein Machinery gene
  AMR84_RS08855 (AMR84_08865) rpsF 1765362..1765649 (-) 288 WP_001151773.1 30S ribosomal protein S6 -
  AMR84_RS08860 (AMR84_08870) mutY 1766713..1767867 (+) 1155 WP_000566235.1 A/G-specific adenine glycosylase -
  AMR84_RS08865 (AMR84_08875) - 1768044..1768637 (+) 594 WP_000402394.1 helix-turn-helix domain-containing protein -
  AMR84_RS08870 (AMR84_08880) trxA 1768683..1769015 (-) 333 WP_001932060.1 thioredoxin -
  AMR84_RS08875 (AMR84_08885) - 1769078..1769578 (-) 501 WP_000446812.1 phosphatase PAP2 family protein -

Sequence

Protein


Download         Length: 163 a.a.        Molecular weight: 18165.81 Da        Isoelectric Point: 4.9119

>NTDB_id=154810 AMR84_RS08850 WP_000609585.1 1764859..1765350(-) (ssbA) [Streptococcus agalactiae strain NGBS357]
MINNVVLVGRMTRDAELRYTPSNQAVATFSLAVNRNFKNQSGEREADFINCVIWRQQAENLANWAKKGALVGITGRIQTR
NYENQQGQRVYVTEVVAESFQLLESRATREGGSPNSYNNGGYNNAPSNNSYSASSQQTPNFSRDESPFGNSNPMDISDDD
LPF

Nucleotide


Download         Length: 492 bp        

>NTDB_id=154810 AMR84_RS08850 WP_000609585.1 1764859..1765350(-) (ssbA) [Streptococcus agalactiae strain NGBS357]
ATGATTAATAATGTAGTACTTGTAGGTCGCATGACCCGTGATGCAGAACTTCGTTATACACCAAGTAATCAAGCGGTAGC
CACTTTTTCACTTGCAGTTAATCGTAATTTTAAAAATCAATCTGGCGAACGTGAGGCTGATTTTATTAACTGTGTTATTT
GGCGCCAACAAGCTGAAAACTTGGCTAACTGGGCAAAAAAAGGTGCTTTGGTTGGAATTACAGGTCGTATCCAAACGCGT
AATTATGAAAACCAACAAGGTCAACGTGTCTATGTAACAGAAGTTGTTGCGGAAAGTTTCCAATTATTGGAAAGTCGTGC
TACACGAGAAGGTGGTTCACCTAACTCTTATAATAACGGTGGCTATAACAATGCTCCGTCAAATAATAGTTATTCAGCTT
CTTCTCAACAAACACCTAATTTTAGTCGTGATGAGAGTCCGTTTGGTAACTCAAATCCAATGGATATTTCAGATGATGAT
CTACCATTCTGA

Domains

Predicted by InterproScan.

Single-strand binding protein family (SSB)

(2-103)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  ssbA Bacillus subtilis subsp. subtilis str. 168

57.714

100

0.62
  ssb Latilactobacillus sakei subsp. sakei 23K

59.064

100

0.62
  ssbB Streptococcus sobrinus strain NIDR 6715-7

55.963

66.871

0.374
  ssbB Bacillus subtilis subsp. subtilis str. 168

56.604

65.031

0.368

Multiple sequence alignment