Detailed information    

insolico Bioinformatically predicted

Overview

Name   ssbA   Type   Machinery gene
Locus tag   BBEV_RS00100 Genome accession   NZ_CP012502
Coordinates   19362..19892 (+) Length   176 a.a.
NCBI ID   WP_069363599.1    Uniprot ID   A0A1D7QR01
Organism   Salisediminibacterium beveridgei strain MLTeJB     
Function   ssDNA binding (predicted from homology)   
DNA processing

Genomic Context

Location: 14362..24892
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  BBEV_RS00070 (BBEV_0015) - 14527..15393 (+) 867 WP_069363593.1 ParB/RepB/Spo0J family partition protein -
  BBEV_RS00075 (BBEV_0016) - 15472..16623 (+) 1152 WP_069363594.1 aminotransferase class V-fold PLP-dependent enzyme -
  BBEV_RS00080 (BBEV_0017) - 16633..17340 (+) 708 WP_069363595.1 DUF554 domain-containing protein -
  BBEV_RS00085 (BBEV_0018) - 17360..17554 (+) 195 WP_069363596.1 DUF951 domain-containing protein -
  BBEV_RS00090 (BBEV_0019) ychF 17660..18760 (+) 1101 WP_069363597.1 redox-regulated ATPase YchF -
  BBEV_RS00095 (BBEV_0020) rpsF 19018..19305 (+) 288 WP_069363598.1 30S ribosomal protein S6 -
  BBEV_RS00100 (BBEV_0021) ssbA 19362..19892 (+) 531 WP_069363599.1 single-stranded DNA-binding protein Machinery gene
  BBEV_RS00105 (BBEV_0022) rpsR 19952..20179 (+) 228 WP_069363600.1 30S ribosomal protein S18 -
  BBEV_RS00110 (BBEV_0023) - 20270..21199 (+) 930 WP_069363601.1 YybS family protein -
  BBEV_RS00115 (BBEV_0024) - 21212..23185 (+) 1974 WP_069363602.1 DHH family phosphoesterase -
  BBEV_RS00120 (BBEV_0025) rplI 23182..23625 (+) 444 WP_069363603.1 50S ribosomal protein L9 -

Sequence

Protein


Download         Length: 176 a.a.        Molecular weight: 19427.18 Da        Isoelectric Point: 4.9328

>NTDB_id=154732 BBEV_RS00100 WP_069363599.1 19362..19892(+) (ssbA) [Salisediminibacterium beveridgei strain MLTeJB]
MINRVVLVGRLTKDPELRYTANGIAVATFTLAVNRPFSNQQGEREADFINIVVWRKQAENVANFLNKGSLAGVDGRMQTR
NYENNEGRRVYVTEVVGDSVQFLEPKGASSGGGQGQQQQRTAPQNQGNQGYGQQSAPPQNQNQGYSQNQNKQPQQDNDPF
SGDGKPIDINDDDLPF

Nucleotide


Download         Length: 531 bp        

>NTDB_id=154732 BBEV_RS00100 WP_069363599.1 19362..19892(+) (ssbA) [Salisediminibacterium beveridgei strain MLTeJB]
ATGATTAACCGTGTTGTCCTTGTGGGACGCTTAACGAAAGATCCTGAACTTCGCTATACGGCGAACGGGATCGCTGTTGC
CACATTCACACTCGCCGTGAATCGGCCATTCTCAAACCAGCAAGGTGAGAGAGAAGCTGATTTCATCAACATTGTTGTTT
GGCGAAAGCAAGCGGAAAACGTGGCGAATTTCCTGAACAAAGGAAGCCTCGCCGGTGTTGATGGACGGATGCAGACGAGA
AATTATGAAAATAATGAAGGACGACGTGTTTACGTAACCGAAGTCGTTGGTGATAGTGTTCAGTTCCTAGAACCAAAAGG
CGCCTCTTCCGGCGGTGGTCAAGGACAGCAACAGCAGCGTACAGCACCTCAGAACCAGGGTAATCAAGGTTACGGACAAC
AATCCGCTCCACCTCAAAACCAGAATCAAGGATATTCTCAAAATCAGAACAAGCAGCCTCAACAGGATAATGATCCGTTT
TCCGGTGACGGGAAACCGATCGACATCAATGATGATGATTTGCCATTCTGA

Domains

Predicted by InterproScan.

Single-strand binding protein family (SSB)

(2-103)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A0A1D7QR01

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  ssbA Bacillus subtilis subsp. subtilis str. 168

64.641

100

0.665
  ssb Latilactobacillus sakei subsp. sakei 23K

55.932

100

0.562
  ssb Glaesserella parasuis strain SC1401

37.368

100

0.403
  ssbB Bacillus subtilis subsp. subtilis str. 168

64.151

60.227

0.386

Multiple sequence alignment