Detailed information    

insolico Bioinformatically predicted

Overview

Name   ssbA   Type   Machinery gene
Locus tag   ACN91_RS00510 Genome accession   NZ_CP012483
Coordinates   95211..95732 (+) Length   173 a.a.
NCBI ID   WP_002094213.1    Uniprot ID   A0A9W7QTR5
Organism   Bacillus cereus strain NJ-W     
Function   ssDNA binding (predicted from homology)   
DNA processing

Genomic Context

Location: 90211..100732
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  ACN91_RS00480 (ACN91_00480) spo0J 90659..91510 (+) 852 WP_078400658.1 stage 0 sporulation protein Spo0J -
  ACN91_RS00485 (ACN91_00485) yyaC 91531..92127 (-) 597 WP_053563259.1 spore protease YyaC -
  ACN91_RS00490 (ACN91_00490) - 92387..93268 (+) 882 WP_000365111.1 mechanosensitive ion channel family protein -
  ACN91_RS00495 (ACN91_00495) - 93289..93486 (+) 198 WP_000435486.1 DUF951 domain-containing protein -
  ACN91_RS00500 (ACN91_00500) ychF 93602..94702 (+) 1101 WP_000524670.1 redox-regulated ATPase YchF -
  ACN91_RS00505 (ACN91_00505) rpsF 94894..95184 (+) 291 WP_001233781.1 30S ribosomal protein S6 -
  ACN91_RS00510 (ACN91_00510) ssbA 95211..95732 (+) 522 WP_002094213.1 single-stranded DNA-binding protein Machinery gene
  ACN91_RS00515 (ACN91_00515) rpsR 95778..96011 (+) 234 WP_000918873.1 30S ribosomal protein S18 -
  ACN91_RS00520 (ACN91_00520) - 96092..97027 (+) 936 WP_053563260.1 YybS family protein -
  ACN91_RS00525 (ACN91_00525) - 97106..99079 (+) 1974 WP_001113779.1 DHH family phosphoesterase -
  ACN91_RS00530 (ACN91_00530) rplI 99076..99522 (+) 447 WP_000864223.1 50S ribosomal protein L9 -

Sequence

Protein


Download         Length: 173 a.a.        Molecular weight: 18779.55 Da        Isoelectric Point: 4.9222

>NTDB_id=154686 ACN91_RS00510 WP_002094213.1 95211..95732(+) (ssbA) [Bacillus cereus strain NJ-W]
MMNRVILVGRLTKDPDLRYTPNGVAVATFTLAVNRAFANQQGEREADFINCVIWRKQAENVANYLKKGSLAGVDGRLQTR
NYDGQDGKRVYVTEVLAESVQFLEPRNGGGEQRGSFNQQPSGAGFGNQGSNPFGQSSNSGNQGNQGNSGFTKNDDPFSNV
GQPIDISDDDLPF

Nucleotide


Download         Length: 522 bp        

>NTDB_id=154686 ACN91_RS00510 WP_002094213.1 95211..95732(+) (ssbA) [Bacillus cereus strain NJ-W]
TTGATGAATCGTGTTATCCTCGTTGGTCGTTTAACTAAGGACCCTGACTTACGTTACACGCCCAATGGTGTTGCAGTAGC
TACTTTTACGTTAGCTGTGAATCGCGCATTTGCGAATCAACAAGGTGAGCGTGAAGCTGACTTTATTAATTGTGTAATAT
GGCGTAAACAAGCAGAAAACGTAGCAAATTATTTGAAAAAAGGAAGCTTAGCAGGCGTAGATGGACGTCTTCAAACTCGT
AATTACGATGGACAAGACGGTAAACGTGTATATGTAACAGAAGTTCTTGCGGAAAGCGTACAATTTTTAGAGCCGCGTAA
TGGCGGTGGGGAGCAACGTGGTTCATTCAATCAGCAACCATCAGGAGCTGGTTTCGGTAACCAAGGCTCTAACCCATTTG
GTCAATCTAGTAATTCAGGTAACCAAGGTAATCAAGGGAACTCTGGATTTACGAAGAATGACGATCCATTTTCAAATGTA
GGTCAACCGATCGACATTTCCGACGACGATTTACCGTTCTAA

Domains

Predicted by InterproScan.

Single-strand binding protein family (SSB)

(2-103)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  ssbA Bacillus subtilis subsp. subtilis str. 168

71.751

100

0.734
  ssb Latilactobacillus sakei subsp. sakei 23K

57.714

100

0.584
  ssbB Bacillus subtilis subsp. subtilis str. 168

64.151

61.272

0.393
  ssb Glaesserella parasuis strain SC1401

36.813

100

0.387

Multiple sequence alignment