Detailed information    

insolico Bioinformatically predicted

Overview

Name   nucA/comI   Type   Machinery gene
Locus tag   AMR71_RS10975 Genome accession   NZ_CP012482
Coordinates   2139518..2139898 (-) Length   126 a.a.
NCBI ID   WP_224559893.1    Uniprot ID   -
Organism   Bacillus altitudinis strain NJ-V2     
Function   cleavage of dsDNA into ssDNA (predicted from homology)   
DNA processing

Genomic Context

Location: 2134518..2144898
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  AMR71_RS10940 (AMR71_10955) - 2135113..2135343 (-) 231 WP_008343816.1 DUF896 domain-containing protein -
  AMR71_RS10945 (AMR71_10960) - 2135413..2136060 (-) 648 WP_057079488.1 YneB family resolvase-like protein -
  AMR71_RS10950 (AMR71_10965) yneA 2136078..2136389 (-) 312 WP_007499348.1 cell division suppressor protein YneA -
  AMR71_RS10955 (AMR71_10970) lexA 2136549..2137169 (+) 621 WP_007499350.1 transcriptional repressor LexA -
  AMR71_RS10960 (AMR71_10975) - 2137217..2137654 (-) 438 WP_057079489.1 hypothetical protein -
  AMR71_RS10965 (AMR71_10980) - 2137951..2138493 (+) 543 WP_017359584.1 IseA DL-endopeptidase inhibitor family protein -
  AMR71_RS10970 (AMR71_10985) - 2138526..2139374 (-) 849 WP_017359585.1 STAS domain-containing protein -
  AMR71_RS10975 (AMR71_10990) nucA/comI 2139518..2139898 (-) 381 WP_224559893.1 NucA/NucB deoxyribonuclease domain-containing protein Machinery gene
  AMR71_RS10980 (AMR71_10995) - 2140126..2142120 (-) 1995 WP_048001485.1 glycosyltransferase family 39 protein -
  AMR71_RS10985 (AMR71_11000) - 2142267..2143175 (-) 909 WP_048001486.1 trypsin-like serine peptidase -

Sequence

Protein


Download         Length: 126 a.a.        Molecular weight: 13758.38 Da        Isoelectric Point: 7.9019

>NTDB_id=154654 AMR71_RS10975 WP_224559893.1 2139518..2139898(-) (nucA/comI) [Bacillus altitudinis strain NJ-V2]
MGALLGGFGEDRSAKGADRYDHVIQFPKERYPETGSHIQEAIRKGHSDVCTIDRNGADARRQESLKGIPTKPGFDRDEWP
MAVCLEGGKGASVQYVSPSDNRGAGSWVGHQISGYPDGKRILFIVK

Nucleotide


Download         Length: 381 bp        

>NTDB_id=154654 AMR71_RS10975 WP_224559893.1 2139518..2139898(-) (nucA/comI) [Bacillus altitudinis strain NJ-V2]
ATGGGTGCGTTATTAGGTGGTTTTGGAGAGGATCGTTCCGCAAAAGGGGCAGATCGTTATGATCATGTGATTCAATTTCC
TAAGGAACGGTATCCTGAAACAGGCAGTCATATTCAAGAAGCTATTCGAAAAGGGCACTCAGATGTGTGTACCATTGACC
GAAATGGGGCAGATGCCCGCAGGCAAGAATCATTAAAAGGAATTCCCACAAAACCTGGTTTTGACCGGGATGAATGGCCG
ATGGCAGTGTGTCTTGAAGGAGGAAAGGGGGCGAGCGTTCAATATGTCAGTCCATCAGATAATAGAGGCGCTGGTTCATG
GGTCGGGCATCAAATCAGCGGGTATCCTGACGGGAAACGAATTTTATTTATTGTCAAATAA

Domains

Predicted by InterproScan.

Deoxyribonuclease NucA/NucB (DNase_NucA_NucB)

(29-115)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  nucA/comI Bacillus subtilis subsp. subtilis str. 168

58.824

94.444

0.556

Multiple sequence alignment