Detailed information    

insolico Bioinformatically predicted

Overview

Name   ruvB   Type   Machinery gene
Locus tag   A7B19_RS38325 Genome accession   NZ_CP015726
Coordinates   8982447..8983550 (+) Length   367 a.a.
NCBI ID   WP_039936858.1    Uniprot ID   -
Organism   Streptomyces sp. RTd22     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 8977447..8988550
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  A7B19_RS38295 - 8977762..8978304 (+) 543 WP_009713659.1 hypothetical protein -
  A7B19_RS38300 pdxS 8978481..8979413 (+) 933 WP_009713658.1 pyridoxal 5'-phosphate synthase lyase subunit PdxS -
  A7B19_RS38305 pdxT 8979506..8980105 (+) 600 WP_063728895.1 pyridoxal 5'-phosphate synthase glutaminase subunit PdxT -
  A7B19_RS38310 - 8980274..8981026 (+) 753 WP_009713656.1 YebC/PmpR family DNA-binding transcriptional regulator -
  A7B19_RS38315 ruvC 8981193..8981762 (+) 570 WP_039936860.1 crossover junction endodeoxyribonuclease RuvC -
  A7B19_RS38320 ruvA 8981759..8982379 (+) 621 WP_063728894.1 Holliday junction branch migration protein RuvA -
  A7B19_RS38325 ruvB 8982447..8983550 (+) 1104 WP_039936858.1 Holliday junction branch migration DNA helicase RuvB Machinery gene
  A7B19_RS38330 yajC 8983756..8984289 (+) 534 WP_063728893.1 preprotein translocase subunit YajC -
  A7B19_RS38335 secD 8984438..8986221 (+) 1784 Protein_7869 protein translocase subunit SecD -
  A7B19_RS38340 secF 8986223..8987356 (+) 1134 WP_063728891.1 protein translocase subunit SecF -
  A7B19_RS38345 - 8987353..8987946 (+) 594 WP_234364972.1 adenine phosphoribosyltransferase -

Sequence

Protein


Download         Length: 367 a.a.        Molecular weight: 38732.13 Da        Isoelectric Point: 4.8264

>NTDB_id=154654 A7B19_RS38325 WP_039936858.1 8982447..8983550(+) (ruvB) [Streptomyces sp. RTd22]
MNWDETAPADADDALSGALPGGAGSRLVGADADGDDQAVEAALRPKDLGEFVGQERVREQLDLVLKAARQRGGTADHVLL
SGAPGLGKTTLSMIIAAEMGAPIRITSGPAIQHAGDLAAILSSLAEGEVLFLDEIHRMSRPAEEMLYMAMEDFRVDVIVG
KGPGATAIPLELPPFTLVGATTRAGLLPPPLRDRFGFTGHMEFYAPAELERVIHRSARLLEVTIEPEGAAEIAGRSRGTP
RIANRLLRRVRDYAQVKADGVITREIAGSALAVYDVDGRGLDRLDRAVLSALLKLFGGGPVGLSTLAVAVGEERETVEEV
AEPFLVREGLLARTPRGRIGTPAAWEHLGLTPPQRGTGGGQSGLFEA

Nucleotide


Download         Length: 1104 bp        

>NTDB_id=154654 A7B19_RS38325 WP_039936858.1 8982447..8983550(+) (ruvB) [Streptomyces sp. RTd22]
GTGAACTGGGACGAGACCGCACCGGCCGACGCCGACGACGCCCTGTCGGGCGCCCTGCCCGGCGGCGCGGGCAGTCGGCT
GGTGGGCGCCGACGCCGACGGGGACGACCAGGCGGTGGAGGCCGCCCTCCGCCCCAAGGACCTGGGGGAGTTCGTCGGCC
AGGAGCGGGTCCGTGAGCAGCTGGACCTGGTCCTCAAGGCGGCCAGGCAGCGCGGCGGCACCGCCGACCACGTGCTGCTC
TCCGGTGCGCCCGGGCTCGGCAAGACCACCCTCTCGATGATCATCGCGGCCGAGATGGGCGCCCCGATCCGCATCACCTC
AGGACCGGCCATCCAGCACGCGGGCGACCTCGCCGCGATCCTCTCCTCGCTCGCCGAGGGCGAGGTGCTGTTCCTGGACG
AGATCCACCGCATGTCCCGGCCCGCCGAGGAGATGCTGTACATGGCGATGGAGGACTTCCGCGTCGACGTCATCGTCGGC
AAGGGGCCCGGGGCCACCGCCATCCCGCTGGAGCTGCCGCCGTTCACCCTGGTCGGCGCGACCACTCGGGCCGGGCTGCT
GCCGCCCCCGCTGCGCGACCGCTTCGGCTTCACCGGCCACATGGAGTTCTACGCCCCCGCCGAGCTGGAGCGTGTGATCC
ACCGCTCCGCCCGGCTCCTGGAGGTGACCATAGAGCCCGAGGGCGCGGCCGAGATCGCCGGGCGCTCCCGCGGCACGCCA
CGTATCGCCAACCGGCTGCTGCGCCGGGTGCGGGACTACGCCCAGGTCAAGGCGGACGGCGTCATCACGCGGGAGATCGC
CGGGAGCGCCCTGGCGGTCTACGACGTGGACGGCCGGGGCCTCGACCGGCTGGACCGGGCGGTGCTCAGCGCCCTGCTCA
AGCTGTTCGGCGGCGGCCCGGTGGGCCTGTCGACCCTGGCGGTCGCGGTGGGGGAGGAGCGTGAGACGGTGGAAGAGGTC
GCCGAGCCGTTTCTGGTGCGCGAGGGCCTGCTGGCCCGTACGCCCCGGGGCCGGATCGGGACCCCCGCGGCCTGGGAGCA
CCTGGGCCTCACCCCGCCGCAGCGCGGCACCGGGGGCGGCCAGAGCGGCCTGTTCGAGGCGTGA

Domains

Predicted by InterProScan.

Holliday junction DNA helicase RuvB P-loop domain (RuvB_N)

(43-201)

RuvB C-terminal winged helix domain (WHD_RuvB)

(279-348)

RuvB AAA lid domain (AAA_lid_4)

(204-277)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  ruvB Bacillus subtilis subsp. subtilis str. 168

53.799

89.646

0.482
  ruvB Streptococcus pneumoniae TIGR4

52.266

90.191

0.471
  ruvB Streptococcus pneumoniae R6

52.266

90.191

0.471
  ruvB Streptococcus pneumoniae D39

52.266

90.191

0.471
  ruvB Synechocystis sp. PCC 6803

53.822

85.559

0.46
  ruvB Helicobacter pylori 26695

49.538

88.556

0.439

Multiple sequence alignment