Detailed information    

insolico Bioinformatically predicted

Overview

Name   comFA   Type   Machinery gene
Locus tag   AMR71_RS03090 Genome accession   NZ_CP012482
Coordinates   627142..628521 (+) Length   459 a.a.
NCBI ID   WP_141116131.1    Uniprot ID   -
Organism   Bacillus altitudinis strain NJ-V2     
Function   ssDNA transport into the cell (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 622142..633521
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  AMR71_RS03070 (AMR71_03070) - 623149..623817 (-) 669 WP_017357860.1 YigZ family protein -
  AMR71_RS03075 (AMR71_03075) degS 624039..625214 (+) 1176 WP_003213166.1 sensor histidine kinase Regulator
  AMR71_RS03080 (AMR71_03080) degU 625279..625968 (+) 690 WP_008348273.1 two-component system response regulator DegU Regulator
  AMR71_RS03085 (AMR71_03085) - 626180..627022 (+) 843 WP_024719242.1 DegV family protein -
  AMR71_RS03090 (AMR71_03090) comFA 627142..628521 (+) 1380 WP_141116131.1 DEAD/DEAH box helicase Machinery gene
  AMR71_RS03095 (AMR71_03095) - 628586..628879 (+) 294 WP_035701582.1 late competence development ComFB family protein -
  AMR71_RS03100 (AMR71_03100) comFC 628981..629562 (+) 582 WP_234781022.1 ComF family protein Machinery gene
  AMR71_RS03105 (AMR71_03105) - 629619..630038 (+) 420 WP_017357864.1 TIGR03826 family flagellar region protein -
  AMR71_RS03110 (AMR71_03110) flgM 630118..630381 (+) 264 WP_003213252.1 flagellar biosynthesis anti-sigma factor FlgM -
  AMR71_RS03115 (AMR71_03115) - 630400..630882 (+) 483 WP_007499977.1 flagellar protein FlgN -
  AMR71_RS03120 (AMR71_03120) flgK 630898..632418 (+) 1521 WP_017368142.1 flagellar hook-associated protein FlgK -
  AMR71_RS03125 (AMR71_03125) flgL 632427..633338 (+) 912 WP_017368141.1 flagellar hook-associated protein FlgL -

Sequence

Protein


Download         Length: 459 a.a.        Molecular weight: 52446.18 Da        Isoelectric Point: 9.9106

>NTDB_id=154631 AMR71_RS03090 WP_141116131.1 627142..628521(+) (comFA) [Bacillus altitudinis strain NJ-V2]
MNLEKAMELSHKLQSRHLLPIECQCTQSELEWLENQGFIHRTPAVNRVAGGLICCRCGVSNKRYFALSPCETCKKDCVYC
RSCIMLGKVSECGFLYEWTGPQKKETRQVELTWQGELSKGQKRASDRLVEAIQNKFDLLVWAVCGAGKTEVLFHGIKYAL
NNGMSVCIATPRTDVVLELEPRMRKAFQGLNIAALYGGSSQRFQMAPLMIATTHQLMRYKNAFDVLIVDEVDAFPYSMDE
RLQFAVLKSMKKTGVRIYLSATPSKKMQKDVACRQLEAIKIPLRFHQKPLPVPTFQWVGDWKKKLKRNRLPASTMNWLHE
HITKKKRVLLFVPSISTMKKVTHILQVQCVNVQGVSADDQERKQKVQHFRDHRYDVLVTTTILERGVTIQDVQVGVLGAE
SPIFTESALVQISGRAGRHPDFFNGDVYFFHFGLTRSMKQAKKHIVKMNNTAEKEFSEK

Nucleotide


Download         Length: 1380 bp        

>NTDB_id=154631 AMR71_RS03090 WP_141116131.1 627142..628521(+) (comFA) [Bacillus altitudinis strain NJ-V2]
TTGAATCTGGAAAAAGCAATGGAACTCAGTCACAAGCTACAATCAAGGCATCTTCTTCCTATTGAATGTCAATGTACACA
GTCCGAATTGGAGTGGCTGGAGAATCAAGGATTCATCCATAGAACACCTGCTGTCAATAGGGTGGCGGGTGGTTTGATCT
GCTGCCGGTGCGGTGTATCAAACAAGCGCTACTTTGCCCTCTCTCCGTGTGAAACATGTAAAAAAGACTGTGTATACTGT
AGATCCTGCATCATGCTGGGAAAAGTAAGTGAATGTGGCTTTCTCTATGAATGGACGGGTCCACAAAAGAAAGAAACAAG
ACAAGTTGAATTAACATGGCAGGGAGAACTTTCTAAAGGGCAAAAGAGAGCGTCCGATAGGCTAGTAGAAGCAATCCAAA
ACAAATTTGATCTGCTCGTTTGGGCTGTTTGTGGTGCGGGGAAAACGGAGGTGCTTTTTCACGGAATAAAATATGCGCTA
AATAACGGAATGAGTGTTTGTATTGCGACGCCTAGAACCGATGTTGTACTTGAGCTTGAACCTCGAATGAGAAAGGCATT
TCAAGGACTGAATATAGCTGCACTTTATGGCGGGAGTTCTCAAAGATTTCAAATGGCACCGCTTATGATCGCTACAACCC
ATCAGCTAATGAGATATAAAAACGCTTTTGATGTCCTCATTGTAGACGAAGTCGATGCTTTTCCTTATTCAATGGATGAA
CGGCTTCAGTTTGCTGTTTTAAAGTCAATGAAAAAAACAGGAGTTAGAATTTACTTAAGTGCCACACCATCTAAAAAAAT
GCAAAAGGATGTTGCTTGTAGACAATTAGAAGCGATCAAAATTCCTCTGCGCTTCCACCAAAAACCGCTGCCTGTCCCAA
CATTTCAATGGGTTGGAGATTGGAAAAAGAAATTAAAAAGAAATCGGCTTCCAGCATCTACAATGAACTGGCTGCATGAA
CATATCACAAAGAAAAAAAGAGTGCTACTCTTTGTTCCTTCTATTTCTACTATGAAGAAGGTAACTCATATTCTTCAAGT
TCAATGTGTAAATGTACAGGGAGTTTCTGCCGATGATCAAGAAAGGAAGCAAAAAGTCCAGCATTTCAGAGATCATAGAT
ACGATGTATTGGTTACAACAACTATTCTAGAAAGAGGCGTTACCATTCAAGATGTTCAAGTGGGCGTATTAGGTGCGGAA
TCTCCTATTTTTACAGAAAGTGCACTTGTCCAAATTTCTGGTAGAGCAGGGAGACATCCAGATTTTTTTAATGGAGACGT
GTACTTTTTTCATTTTGGTTTAACGAGAAGTATGAAACAAGCAAAGAAACATATCGTAAAAATGAATAATACAGCTGAAA
AAGAGTTTTCTGAAAAATAG

Domains

Predicted by InterproScan.

Helicase conserved C-terminal domain (Helicase_C)

(320-419)

Type III restriction enzyme, res subunit (ResIII)

(116-264)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comFA Bacillus subtilis subsp. subtilis str. 168

52.125

97.386

0.508
  comFA/cflA Streptococcus mitis NCTC 12261

38.695

93.464

0.362
  comFA/cflA Streptococcus pneumoniae Rx1

38.515

93.9

0.362
  comFA/cflA Streptococcus pneumoniae D39

38.515

93.9

0.362
  comFA/cflA Streptococcus pneumoniae R6

38.515

93.9

0.362

Multiple sequence alignment