Detailed information    

insolico Bioinformatically predicted

Overview

Name   vraR   Type   Regulator
Locus tag   A7B19_RS28075 Genome accession   NZ_CP015726
Coordinates   6635159..6635818 (+) Length   219 a.a.
NCBI ID   WP_063735314.1    Uniprot ID   -
Organism   Streptomyces sp. RTd22     
Function   repress expression of competence genes (predicted from homology)   
Competence regulation

Genomic Context

Location: 6630159..6640818
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  A7B19_RS28055 - 6630608..6631549 (-) 942 WP_063735311.1 LysR family transcriptional regulator -
  A7B19_RS28060 - 6631635..6632984 (+) 1350 WP_079152424.1 aspartate aminotransferase family protein -
  A7B19_RS28065 - 6633124..6633969 (+) 846 WP_063735312.1 CPBP family intramembrane glutamic endopeptidase -
  A7B19_RS28070 - 6634008..6635162 (+) 1155 WP_063735313.1 sensor histidine kinase -
  A7B19_RS28075 vraR 6635159..6635818 (+) 660 WP_063735314.1 response regulator Regulator
  A7B19_RS28080 - 6636301..6638808 (+) 2508 WP_063735433.1 SdrD B-like domain-containing protein -
  A7B19_RS28085 - 6638953..6639633 (+) 681 WP_063735315.1 hypothetical protein -

Sequence

Protein


Download         Length: 219 a.a.        Molecular weight: 23570.34 Da        Isoelectric Point: 5.8321

>NTDB_id=154629 A7B19_RS28075 WP_063735314.1 6635159..6635818(+) (vraR) [Streptomyces sp. RTd22]
MTAPIRVLVCDDQVLVRTGLVTIIGAQPDLEVVGECEDGRVAVDLAGRLRPDVVVMDVRMPVLDGIEATRLLAGAGVPQQ
VKVLVVTTFNLDEYVYEALRAGASGFLLKDAPPSQLLHGIRTVATGAALLDPEVTRKLVGTYAARIRPAAGTPHDNPLTP
RELEVLRLIADGRSNSEIAAALQISQETVKTFVSRILTKLDLRDRVQAVVYAYRQGLAT

Nucleotide


Download         Length: 660 bp        

>NTDB_id=154629 A7B19_RS28075 WP_063735314.1 6635159..6635818(+) (vraR) [Streptomyces sp. RTd22]
GTGACCGCGCCGATCCGGGTCCTGGTCTGCGATGACCAGGTGCTGGTCCGTACCGGGCTGGTGACGATCATCGGCGCCCA
GCCCGACCTCGAGGTGGTGGGCGAGTGCGAGGACGGGCGAGTTGCGGTCGACCTGGCCGGCCGACTGCGCCCGGACGTCG
TGGTGATGGACGTACGCATGCCGGTGCTCGACGGCATCGAGGCAACCCGTCTGCTCGCCGGTGCCGGGGTGCCACAGCAG
GTCAAGGTGCTCGTGGTGACGACGTTCAACCTGGACGAGTACGTCTACGAGGCGCTGCGCGCGGGGGCGAGCGGGTTTCT
GCTCAAGGACGCACCGCCGTCCCAACTGCTGCACGGGATCCGGACCGTGGCCACCGGCGCGGCCCTGCTGGACCCCGAGG
TGACGCGCAAGCTCGTGGGCACGTACGCCGCCCGGATCCGGCCCGCCGCGGGCACCCCGCACGACAACCCGCTGACCCCG
CGCGAGCTGGAGGTCCTTCGCCTCATCGCGGACGGCCGCTCCAACAGCGAAATCGCCGCGGCCCTCCAGATCAGCCAGGA
GACCGTCAAAACCTTCGTCTCCCGCATCCTCACCAAACTCGATCTCCGCGACCGCGTCCAGGCAGTCGTCTACGCCTACC
GCCAGGGCCTGGCGACCTGA

Domains

Predicted by InterProScan.

Bacterial regulatory proteins, luxR family (GerE)

(157-212)

Response regulator receiver domain (Response_reg)

(7-119)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  vraR Staphylococcus aureus N315

41.315

97.26

0.402
  degU Bacillus subtilis subsp. subtilis str. 168

37.333

100

0.384

Multiple sequence alignment