Detailed information
Bioinformatically predicted
Overview
| Name | ssbA | Type | Machinery gene |
| Locus tag | AMM49_RS08510 | Genome accession | NZ_CP012480 |
| Coordinates | 1690480..1690971 (-) | Length | 163 a.a. |
| NCBI ID | WP_000609585.1 | Uniprot ID | A0AAV3JH34 |
| Organism | Streptococcus agalactiae strain NGBS128 | ||
| Function | ssDNA binding (predicted from homology) DNA processing |
||
Genomic Context
Location: 1685480..1695971
| Locus tag | Gene name | Coordinates (strand) | Size (bp) | Protein ID | Product | Description |
|---|---|---|---|---|---|---|
| AMM49_RS08495 (AMM49_08485) | - | 1688386..1689057 (-) | 672 | WP_000174846.1 | DUF1129 domain-containing protein | - |
| AMM49_RS08500 (AMM49_08490) | - | 1689082..1690026 (-) | 945 | WP_000812120.1 | magnesium transporter CorA family protein | - |
| AMM49_RS08505 (AMM49_08495) | rpsR | 1690196..1690435 (-) | 240 | WP_000068665.1 | 30S ribosomal protein S18 | - |
| AMM49_RS08510 (AMM49_08500) | ssbA | 1690480..1690971 (-) | 492 | WP_000609585.1 | single-stranded DNA-binding protein | Machinery gene |
| AMM49_RS08515 (AMM49_08505) | rpsF | 1690983..1691270 (-) | 288 | WP_001151773.1 | 30S ribosomal protein S6 | - |
| AMM49_RS08520 (AMM49_08510) | mutY | 1692334..1693488 (+) | 1155 | WP_161511970.1 | A/G-specific adenine glycosylase | - |
| AMM49_RS08525 (AMM49_08515) | - | 1693665..1694258 (+) | 594 | WP_000402394.1 | helix-turn-helix domain-containing protein | - |
| AMM49_RS08530 (AMM49_08520) | trxA | 1694304..1694636 (-) | 333 | WP_001932060.1 | thioredoxin | - |
| AMM49_RS08535 (AMM49_08525) | - | 1694699..1695199 (-) | 501 | WP_000446812.1 | phosphatase PAP2 family protein | - |
Sequence
Protein
Download Length: 163 a.a. Molecular weight: 18165.81 Da Isoelectric Point: 4.9119
>NTDB_id=154613 AMM49_RS08510 WP_000609585.1 1690480..1690971(-) (ssbA) [Streptococcus agalactiae strain NGBS128]
MINNVVLVGRMTRDAELRYTPSNQAVATFSLAVNRNFKNQSGEREADFINCVIWRQQAENLANWAKKGALVGITGRIQTR
NYENQQGQRVYVTEVVAESFQLLESRATREGGSPNSYNNGGYNNAPSNNSYSASSQQTPNFSRDESPFGNSNPMDISDDD
LPF
MINNVVLVGRMTRDAELRYTPSNQAVATFSLAVNRNFKNQSGEREADFINCVIWRQQAENLANWAKKGALVGITGRIQTR
NYENQQGQRVYVTEVVAESFQLLESRATREGGSPNSYNNGGYNNAPSNNSYSASSQQTPNFSRDESPFGNSNPMDISDDD
LPF
Nucleotide
Download Length: 492 bp
>NTDB_id=154613 AMM49_RS08510 WP_000609585.1 1690480..1690971(-) (ssbA) [Streptococcus agalactiae strain NGBS128]
ATGATTAATAATGTAGTACTTGTAGGTCGCATGACCCGTGATGCAGAACTTCGTTATACACCAAGTAATCAAGCGGTAGC
CACTTTTTCACTTGCAGTTAATCGTAATTTTAAAAATCAATCTGGCGAACGTGAGGCTGATTTTATTAACTGTGTTATTT
GGCGCCAACAAGCTGAAAACTTGGCTAACTGGGCAAAAAAAGGTGCTTTGGTTGGAATTACAGGTCGTATCCAAACGCGT
AATTATGAAAACCAACAAGGTCAACGTGTCTATGTAACAGAAGTTGTTGCGGAAAGTTTCCAATTATTGGAAAGTCGTGC
TACACGAGAAGGTGGTTCACCTAACTCTTATAATAACGGTGGCTATAACAATGCTCCGTCAAATAATAGTTATTCAGCTT
CTTCTCAACAAACACCTAATTTTAGTCGTGATGAGAGTCCGTTTGGTAACTCAAATCCAATGGATATTTCAGATGATGAT
CTACCATTCTAA
ATGATTAATAATGTAGTACTTGTAGGTCGCATGACCCGTGATGCAGAACTTCGTTATACACCAAGTAATCAAGCGGTAGC
CACTTTTTCACTTGCAGTTAATCGTAATTTTAAAAATCAATCTGGCGAACGTGAGGCTGATTTTATTAACTGTGTTATTT
GGCGCCAACAAGCTGAAAACTTGGCTAACTGGGCAAAAAAAGGTGCTTTGGTTGGAATTACAGGTCGTATCCAAACGCGT
AATTATGAAAACCAACAAGGTCAACGTGTCTATGTAACAGAAGTTGTTGCGGAAAGTTTCCAATTATTGGAAAGTCGTGC
TACACGAGAAGGTGGTTCACCTAACTCTTATAATAACGGTGGCTATAACAATGCTCCGTCAAATAATAGTTATTCAGCTT
CTTCTCAACAAACACCTAATTTTAGTCGTGATGAGAGTCCGTTTGGTAACTCAAATCCAATGGATATTTCAGATGATGAT
CTACCATTCTAA
3D structure
| Source | ID | Structure |
|---|
Similar proteins
Only experimentally validated proteins are listed.
| Protein | Organism | Identities (%) | Coverage (%) | Ha-value |
|---|---|---|---|---|
| ssbA | Bacillus subtilis subsp. subtilis str. 168 |
57.714 |
100 |
0.62 |
| ssb | Latilactobacillus sakei subsp. sakei 23K |
59.064 |
100 |
0.62 |
| ssbB | Streptococcus sobrinus strain NIDR 6715-7 |
55.963 |
66.871 |
0.374 |
| ssbB | Bacillus subtilis subsp. subtilis str. 168 |
56.604 |
65.031 |
0.368 |