Detailed information    

insolico Bioinformatically predicted

Overview

Name   ciaR   Type   Regulator
Locus tag   A7319_RS18450 Genome accession   NZ_CP015638
Coordinates   4199360..4200019 (-) Length   219 a.a.
NCBI ID   WP_024076279.1    Uniprot ID   A0ACA7PAC5
Organism   Pseudomonas fluorescens strain L111     
Function   repress competence development (predicted from homology)   
Competence regulation

Genomic Context

Location: 4194360..4205019
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  A7319_RS18435 (A7319_18420) - 4195418..4195807 (+) 390 WP_069077429.1 DUF2946 domain-containing protein -
  A7319_RS18440 (A7319_18425) - 4195911..4197998 (+) 2088 WP_155766411.1 TonB-dependent receptor -
  A7319_RS18445 (A7319_18430) - 4198029..4199363 (-) 1335 WP_069076555.1 sensor histidine kinase -
  A7319_RS18450 (A7319_18435) ciaR 4199360..4200019 (-) 660 WP_024076279.1 response regulator transcription factor Regulator
  A7319_RS18455 (A7319_18440) - 4200151..4200474 (+) 324 WP_069076556.1 PepSY domain-containing protein -
  A7319_RS18460 (A7319_18445) - 4200557..4201027 (+) 471 WP_024076281.1 DUF2271 domain-containing protein -
  A7319_RS18465 (A7319_18450) - 4201053..4203233 (+) 2181 WP_069076557.1 PepSY domain-containing protein -
  A7319_RS18470 (A7319_18455) - 4203223..4204230 (+) 1008 WP_069076558.1 FAD:protein FMN transferase -
  A7319_RS18475 (A7319_18460) - 4204227..4204928 (+) 702 WP_024076284.1 VIT1/CCC1 transporter family protein -

Sequence

Protein


Download         Length: 219 a.a.        Molecular weight: 24420.97 Da        Isoelectric Point: 5.1420

>NTDB_id=154355 A7319_RS18450 WP_024076279.1 4199360..4200019(-) (ciaR) [Pseudomonas fluorescens strain L111]
MRVLLVEDAPGLGEAVREQIADDGHAVDWVQRLEHASASVRTTPYDLILLDLMLPDGRGLDFLRQQRSAGNVTPVIILTA
QDQISDRIAGLNAGADDYLVKPFDLFELSARVAAVARRYSGNPNPLIRLGELQVDMNARTVQRAGVTIDLTAREWALFEA
FVQRPTALLSKSQLEERLYAFGAEIESNTIEVYISRLRKKLGRELVETVRGMGYRLMTV

Nucleotide


Download         Length: 660 bp        

>NTDB_id=154355 A7319_RS18450 WP_024076279.1 4199360..4200019(-) (ciaR) [Pseudomonas fluorescens strain L111]
ATGCGCGTTTTATTGGTCGAGGACGCACCTGGGCTGGGCGAGGCGGTGCGCGAACAGATTGCCGATGACGGCCACGCCGT
CGATTGGGTGCAGCGACTGGAGCATGCGAGCGCCAGTGTGCGCACCACGCCGTATGACCTGATTCTGTTGGACCTGATGT
TGCCTGACGGTCGCGGGCTGGACTTTTTGCGCCAGCAGCGTTCGGCTGGCAACGTGACCCCGGTGATCATCCTCACCGCC
CAGGACCAGATTTCCGACCGCATCGCCGGCCTGAATGCCGGCGCCGACGACTACTTGGTCAAACCGTTCGACCTGTTTGA
ACTCTCGGCCCGTGTGGCCGCGGTGGCCCGCCGCTACAGCGGCAACCCGAACCCGCTGATCAGGCTCGGTGAATTACAGG
TCGACATGAACGCGCGCACCGTGCAGCGCGCCGGCGTCACCATTGACCTCACGGCACGCGAGTGGGCGCTGTTCGAGGCG
TTTGTGCAGCGCCCTACGGCGTTGCTGTCGAAGTCGCAGCTCGAAGAGCGCTTGTATGCCTTTGGCGCCGAAATCGAGAG
CAACACCATCGAGGTCTACATCAGCCGCCTGCGTAAAAAACTGGGGCGTGAGCTGGTGGAAACCGTGCGCGGCATGGGCT
ATCGGTTGATGACCGTATGA

Domains

Predicted by InterProScan.

Response regulator receiver domain (Response_reg)

(3-112)

Transcriptional regulatory protein, C terminal (Trans_reg_C)

(147-216)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  ciaR Streptococcus mutans UA159

38.938

100

0.402
  ciaR Streptococcus pneumoniae Rx1

36.283

100

0.374
  ciaR Streptococcus pneumoniae D39

36.283

100

0.374
  ciaR Streptococcus pneumoniae R6

36.283

100

0.374
  ciaR Streptococcus pneumoniae TIGR4

36.283

100

0.374
  covR Lactococcus lactis subsp. lactis strain DGCC12653

35.874

100

0.365

Multiple sequence alignment