Detailed information
Bioinformatically predicted
Overview
| Name | ssb | Type | Machinery gene |
| Locus tag | AK972_RS02290 | Genome accession | NZ_CP012400 |
| Coordinates | 455722..456240 (+) | Length | 172 a.a. |
| NCBI ID | WP_003210042.1 | Uniprot ID | A0A1R0G976 |
| Organism | Pseudomonas yamanorum strain LBUM636 | ||
| Function | ssDNA binding (predicted from homology) DNA processing |
||
Genomic Context
Location: 450722..461240
| Locus tag | Gene name | Coordinates (strand) | Size (bp) | Protein ID | Product | Description |
|---|---|---|---|---|---|---|
| AK972_RS02275 (AK972_0428) | bfr | 450772..451236 (+) | 465 | WP_003210048.1 | bacterioferritin | - |
| AK972_RS02280 (AK972_0429) | uvrA | 451305..454139 (-) | 2835 | WP_010174605.1 | excinuclease ABC subunit UvrA | - |
| AK972_RS02285 (AK972_0430) | - | 454318..455712 (+) | 1395 | WP_017476314.1 | MFS transporter | - |
| AK972_RS02290 (AK972_0431) | ssb | 455722..456240 (+) | 519 | WP_003210042.1 | single-stranded DNA-binding protein | Machinery gene |
| AK972_RS02295 (AK972_0432) | - | 456331..457239 (-) | 909 | WP_063026819.1 | LysR family transcriptional regulator | - |
| AK972_RS02300 (AK972_0433) | tam | 457344..458105 (+) | 762 | WP_063026820.1 | trans-aconitate 2-methyltransferase | - |
| AK972_RS02305 (AK972_0434) | - | 458118..458669 (-) | 552 | WP_017476311.1 | cysteine hydrolase family protein | - |
| AK972_RS02310 (AK972_0435) | - | 458765..459745 (+) | 981 | WP_063026822.1 | GlxA family transcriptional regulator | - |
| AK972_RS02315 (AK972_0436) | - | 459917..461026 (+) | 1110 | WP_063026824.1 | DUF3182 family protein | - |
Sequence
Protein
Download Length: 172 a.a. Molecular weight: 19131.30 Da Isoelectric Point: 5.9455
>NTDB_id=154293 AK972_RS02290 WP_003210042.1 455722..456240(+) (ssb) [Pseudomonas yamanorum strain LBUM636]
MARGVNKVILVGTCGQDPEVRYLPNGNAVTNLSLATSEQWTDKQTGQKVEKTEWHRVSMFGKVAEIAGEYLRKGSQVYIE
GKLQTREWEKDGIKRYTTEIVVDMQGTMQLLGGRPQGDQQGQGGMSNSAPRPQQQSRPQPTQQPQRESRPAPQQAAPQPA
ADFDSFDDDIPF
MARGVNKVILVGTCGQDPEVRYLPNGNAVTNLSLATSEQWTDKQTGQKVEKTEWHRVSMFGKVAEIAGEYLRKGSQVYIE
GKLQTREWEKDGIKRYTTEIVVDMQGTMQLLGGRPQGDQQGQGGMSNSAPRPQQQSRPQPTQQPQRESRPAPQQAAPQPA
ADFDSFDDDIPF
Nucleotide
Download Length: 519 bp
>NTDB_id=154293 AK972_RS02290 WP_003210042.1 455722..456240(+) (ssb) [Pseudomonas yamanorum strain LBUM636]
ATGGCCCGTGGGGTTAACAAAGTCATATTGGTCGGTACATGCGGCCAGGATCCCGAAGTTCGCTACTTGCCGAACGGTAA
CGCCGTGACCAACCTGAGTCTGGCGACCAGCGAACAGTGGACCGACAAGCAAACCGGCCAGAAGGTCGAGAAAACCGAAT
GGCACCGTGTGTCGATGTTCGGCAAGGTTGCAGAGATCGCCGGTGAATACCTGCGCAAAGGTTCGCAGGTCTACATCGAA
GGCAAACTGCAAACCCGCGAGTGGGAAAAAGACGGCATCAAGCGTTACACCACTGAAATCGTGGTCGACATGCAAGGCAC
CATGCAATTGCTGGGCGGCCGTCCACAGGGCGACCAACAGGGCCAGGGCGGCATGTCCAACTCGGCACCGCGTCCACAGC
AGCAGTCCCGTCCGCAGCCGACCCAGCAGCCACAGCGTGAGTCGCGTCCAGCGCCACAGCAGGCCGCTCCTCAGCCGGCA
GCCGACTTCGACAGCTTTGATGACGATATCCCGTTCTAA
ATGGCCCGTGGGGTTAACAAAGTCATATTGGTCGGTACATGCGGCCAGGATCCCGAAGTTCGCTACTTGCCGAACGGTAA
CGCCGTGACCAACCTGAGTCTGGCGACCAGCGAACAGTGGACCGACAAGCAAACCGGCCAGAAGGTCGAGAAAACCGAAT
GGCACCGTGTGTCGATGTTCGGCAAGGTTGCAGAGATCGCCGGTGAATACCTGCGCAAAGGTTCGCAGGTCTACATCGAA
GGCAAACTGCAAACCCGCGAGTGGGAAAAAGACGGCATCAAGCGTTACACCACTGAAATCGTGGTCGACATGCAAGGCAC
CATGCAATTGCTGGGCGGCCGTCCACAGGGCGACCAACAGGGCCAGGGCGGCATGTCCAACTCGGCACCGCGTCCACAGC
AGCAGTCCCGTCCGCAGCCGACCCAGCAGCCACAGCGTGAGTCGCGTCCAGCGCCACAGCAGGCCGCTCCTCAGCCGGCA
GCCGACTTCGACAGCTTTGATGACGATATCCCGTTCTAA
Similar proteins
Only experimentally validated proteins are listed.
| Protein | Organism | Identities (%) | Coverage (%) | Ha-value |
|---|---|---|---|---|
| ssb | Vibrio cholerae strain A1552 |
59.218 |
100 |
0.616 |
| ssb | Glaesserella parasuis strain SC1401 |
44.792 |
100 |
0.5 |
| ssb | Neisseria meningitidis MC58 |
46.961 |
100 |
0.494 |
| ssb | Neisseria gonorrhoeae MS11 |
48.295 |
100 |
0.494 |