Detailed information    

insolico Bioinformatically predicted

Overview

Name   pilK   Type   Machinery gene
Locus tag   DE8555_RS04375 Genome accession   NZ_CP012393
Coordinates   836659..837255 (+) Length   198 a.a.
NCBI ID   WP_002236356.1    Uniprot ID   A0AAC9GDD0
Organism   Neisseria meningitidis strain DE8555     
Function   type IV pilus (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 831659..842255
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  DE8555_RS04350 (DE8555_0812) - 831953..832540 (-) 588 WP_002220670.1 superoxide dismutase -
  DE8555_RS04355 (DE8555_0813) dnaB 832703..834109 (+) 1407 WP_002220671.1 replicative DNA helicase -
  DE8555_RS04360 (DE8555_0814) pilH 834418..835092 (+) 675 WP_063399723.1 Tfp pilus assembly protein FimT/FimU Machinery gene
  DE8555_RS04365 (DE8555_0815) pilV 835116..835739 (+) 624 WP_063399721.1 type IV pilus modification protein PilV Machinery gene
  DE8555_RS04370 (DE8555_0816) pilJ 835736..836680 (+) 945 WP_063399719.1 PilW family protein Machinery gene
  DE8555_RS04375 (DE8555_0817) pilK 836659..837255 (+) 597 WP_002236356.1 PilX N-terminal domain-containing pilus assembly protein Machinery gene
  DE8555_RS04380 (DE8555_0818) pilL 837260..837757 (+) 498 WP_002235687.1 PilX family type IV pilin Machinery gene
  DE8555_RS04390 (DE8555_0819) - 840092..840520 (-) 429 Protein_826 AzlC family ABC transporter permease -
  DE8555_RS04395 (DE8555_0820) dut 840663..841115 (+) 453 WP_002220679.1 dUTP diphosphatase -

Sequence

Protein


Download         Length: 198 a.a.        Molecular weight: 21885.89 Da        Isoelectric Point: 8.0854

>NTDB_id=154166 DE8555_RS04375 WP_002236356.1 836659..837255(+) (pilK) [Neisseria meningitidis strain DE8555]
MRKQNTLTGIPTSDGQRGFALFIVLMVMIVVAFLVVTAAQSYNTEQRISANESDRKLALSLAEAALREGELQVLDLEYDT
DSKVTFSENCEKSLCTAVSVRTNNNGNEEAFDNIVVQGKPTVEAVKRFCPANSTDLCIDKKGMKYKKGTRSVSKPPRYII
EYLGVKNGENVYRVTAKAWGKNANTVVVLQSYVSNNDE

Nucleotide


Download         Length: 597 bp        

>NTDB_id=154166 DE8555_RS04375 WP_002236356.1 836659..837255(+) (pilK) [Neisseria meningitidis strain DE8555]
ATGCGCAAACAGAACACTTTGACGGGAATCCCGACTTCTGACGGACAGAGGGGGTTCGCGCTGTTTATCGTACTGATGGT
GATGATCGTCGTGGCTTTTTTGGTTGTAACTGCCGCGCAGTCTTACAATACCGAGCAGCGGATCAGTGCCAACGAATCAG
ACAGGAAATTGGCTTTGTCTTTGGCCGAGGCGGCTTTGCGGGAAGGCGAACTTCAGGTTTTGGATTTGGAATATGATACG
GACAGTAAGGTTACATTTAGTGAAAACTGTGAAAAAAGTCTGTGTACCGCAGTGAGTGTGCGGACAAATAATAATGGTAA
TGAAGAGGCTTTTGACAATATCGTGGTGCAAGGCAAGCCCACCGTTGAGGCGGTGAAGCGTTTTTGCCCTGCAAATTCTA
CCGACCTGTGCATTGACAAGAAAGGGATGAAATATAAGAAAGGCACGAGAAGCGTCAGCAAACCACCGCGCTATATTATC
GAATATTTGGGCGTGAAGAACGGAGAAAATGTTTATCGGGTTACTGCCAAGGCTTGGGGTAAGAATGCCAATACCGTGGT
CGTCCTTCAATCTTATGTAAGCAATAATGATGAGTAA

Domains

Predicted by InterproScan.

PilX N-terminal (PilX_N)

(17-67)

Type IV pilus assembly protein PilX C-term (PilX)

(92-193)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  pilK Neisseria gonorrhoeae MS11

86.139

100

0.879

Multiple sequence alignment