Detailed information    

insolico Bioinformatically predicted

Overview

Name   pilJ   Type   Machinery gene
Locus tag   DE8555_RS04370 Genome accession   NZ_CP012393
Coordinates   835736..836680 (+) Length   314 a.a.
NCBI ID   WP_063399719.1    Uniprot ID   A0AAC9CQ21
Organism   Neisseria meningitidis strain DE8555     
Function   type IV pilus (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 830736..841680
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  DE8555_RS04345 (DE8555_0811) - 830946..831455 (+) 510 WP_063399725.1 isoprenylcysteine carboxyl methyltransferase family protein -
  DE8555_RS04350 (DE8555_0812) - 831953..832540 (-) 588 WP_002220670.1 superoxide dismutase -
  DE8555_RS04355 (DE8555_0813) dnaB 832703..834109 (+) 1407 WP_002220671.1 replicative DNA helicase -
  DE8555_RS04360 (DE8555_0814) pilH 834418..835092 (+) 675 WP_063399723.1 Tfp pilus assembly protein FimT/FimU Machinery gene
  DE8555_RS04365 (DE8555_0815) pilV 835116..835739 (+) 624 WP_063399721.1 type IV pilus modification protein PilV Machinery gene
  DE8555_RS04370 (DE8555_0816) pilJ 835736..836680 (+) 945 WP_063399719.1 PilW family protein Machinery gene
  DE8555_RS04375 (DE8555_0817) pilK 836659..837255 (+) 597 WP_002236356.1 PilX N-terminal domain-containing pilus assembly protein Machinery gene
  DE8555_RS04380 (DE8555_0818) pilL 837260..837757 (+) 498 WP_002235687.1 PilX family type IV pilin Machinery gene
  DE8555_RS04390 (DE8555_0819) - 840092..840520 (-) 429 Protein_826 AzlC family ABC transporter permease -
  DE8555_RS04395 (DE8555_0820) dut 840663..841115 (+) 453 WP_002220679.1 dUTP diphosphatase -

Sequence

Protein


Download         Length: 314 a.a.        Molecular weight: 34658.44 Da        Isoelectric Point: 8.9690

>NTDB_id=154165 DE8555_RS04370 WP_063399719.1 835736..836680(+) (pilJ) [Neisseria meningitidis strain DE8555]
MKRKMLNVPKGNYDGMKGFTIIEFLVAGMLSMIVLMAVGSSYFTSRKLNDAANERLAEQQDLRNAATLIVRDARMAGSFG
CFNMSEHIGSDVVPNVAQKKPLFSLKRKNSTNKLIPITESSDINYQNFFQVGSALIFQYGIDDVNASAETTVVSSCAAIS
KPGKQIPTLEDAKKELKIPDQDKEQNGNIARQRHVVNAYAVGRIADEEGLFRFQLDDKGKWGNPQLLVKKVRRMKVRYIY
VSGCPEDDDAGKEETFKYTDKFDSSTNAVTPAGVEVLLSSGTDTKIAASSDNHIYAYRIDATIRGGNVCANRTL

Nucleotide


Download         Length: 945 bp        

>NTDB_id=154165 DE8555_RS04370 WP_063399719.1 835736..836680(+) (pilJ) [Neisseria meningitidis strain DE8555]
ATGAAACGTAAAATGCTAAACGTACCAAAAGGCAATTATGATGGTATGAAGGGTTTTACCATTATTGAATTTTTGGTTGC
GGGCATGCTCAGTATGATTGTCCTGATGGCGGTCGGATCGAGTTACTTCACATCCCGGAAATTAAATGATGCGGCAAACG
AGCGTCTTGCCGAGCAACAGGATTTGCGGAATGCGGCAACATTGATTGTCCGCGATGCAAGAATGGCGGGGAGCTTCGGT
TGTTTCAATATGTCTGAGCATATCGGAAGTGATGTTGTTCCCAATGTGGCGCAAAAAAAACCTCTTTTTTCCTTAAAAAG
GAAGAACAGTACAAATAAACTTATCCCCATAACGGAATCTTCAGATATCAATTATCAGAATTTTTTCCAGGTTGGTAGCG
CATTGATTTTTCAATACGGAATCGATGATGTTAATGCAAGCGCCGAGACTACCGTCGTCAGCAGCTGTGCCGCAATATCG
AAACCGGGCAAGCAAATCCCTACTTTGGAAGATGCAAAAAAAGAATTGAAGATTCCGGATCAGGATAAGGAGCAAAATGG
CAATATAGCGCGTCAAAGGCATGTGGTCAATGCCTATGCGGTCGGCAGGATTGCCGATGAGGAAGGTTTGTTCCGCTTCC
AATTGGATGATAAGGGCAAGTGGGGTAATCCTCAGTTGCTCGTGAAAAAGGTTAGACGTATGAAAGTGCGGTATATCTAT
GTTTCCGGCTGTCCTGAAGATGACGATGCCGGCAAAGAGGAAACATTCAAATATACGGATAAATTCGACAGCTCCACAAA
TGCTGTTACGCCCGCCGGGGTGGAGGTTTTATTGAGTAGCGGTACTGATACCAAGATTGCCGCTTCTTCAGACAATCATA
TTTATGCTTACCGTATCGATGCGACAATACGCGGGGGAAATGTATGCGCAAACAGAACACTTTGA

Domains


No domain identified.



Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  pilJ Neisseria gonorrhoeae MS11

88.291

100

0.889

Multiple sequence alignment