Detailed information    

insolico Bioinformatically predicted

Overview

Name   pilL   Type   Machinery gene
Locus tag   DE8555_RS04380 Genome accession   NZ_CP012393
Coordinates   837260..837757 (+) Length   165 a.a.
NCBI ID   WP_002235687.1    Uniprot ID   -
Organism   Neisseria meningitidis strain DE8555     
Function   type IV pilus (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 832260..842757
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  DE8555_RS04355 (DE8555_0813) dnaB 832703..834109 (+) 1407 WP_002220671.1 replicative DNA helicase -
  DE8555_RS04360 (DE8555_0814) pilH 834418..835092 (+) 675 WP_063399723.1 Tfp pilus assembly protein FimT/FimU Machinery gene
  DE8555_RS04365 (DE8555_0815) pilV 835116..835739 (+) 624 WP_063399721.1 type IV pilus modification protein PilV Machinery gene
  DE8555_RS04370 (DE8555_0816) pilJ 835736..836680 (+) 945 WP_063399719.1 PilW family protein Machinery gene
  DE8555_RS04375 (DE8555_0817) pilK 836659..837255 (+) 597 WP_002236356.1 PilX N-terminal domain-containing pilus assembly protein Machinery gene
  DE8555_RS04380 (DE8555_0818) pilL 837260..837757 (+) 498 WP_002235687.1 PilX family type IV pilin Machinery gene
  DE8555_RS04390 (DE8555_0819) - 840092..840520 (-) 429 Protein_826 AzlC family ABC transporter permease -
  DE8555_RS04395 (DE8555_0820) dut 840663..841115 (+) 453 WP_002220679.1 dUTP diphosphatase -
  DE8555_RS04400 (DE8555_0821) dapC 841191..842378 (+) 1188 WP_002220680.1 succinyldiaminopimelate transaminase -
  DE8555_RS14965 - 842466..842591 (+) 126 Protein_829 IS5/IS1182 family transposase -

Sequence

Protein


Download         Length: 165 a.a.        Molecular weight: 18297.17 Da        Isoelectric Point: 9.4425

>NTDB_id=154167 DE8555_RS04380 WP_002235687.1 837260..837757(+) (pilL) [Neisseria meningitidis strain DE8555]
MEQKGFTLIEMMIVVAILGIISVIAIPSYQSYIEKGYQSQLYTEMVGINNTVKQIILKNPQDSDDILNIKLTMFVSGYKM
NPKIAEKYSVSWEFVDAPKSRANRALKSRAYRLVGVPKAGTGYTLSVWVNSVGDGYKCRDAASAQAHLETLSADVGCEAF
SNRKK

Nucleotide


Download         Length: 498 bp        

>NTDB_id=154167 DE8555_RS04380 WP_002235687.1 837260..837757(+) (pilL) [Neisseria meningitidis strain DE8555]
ATGGAACAAAAAGGGTTTACATTGATTGAGATGATGATAGTCGTCGCGATACTCGGCATCATCAGCGTCATTGCCATACC
TTCTTATCAAAGTTATATTGAAAAAGGCTATCAGTCCCAGCTTTATACGGAGATGGTCGGTATCAACAATACTGTCAAAC
AGATTATTTTGAAAAATCCACAGGATAGTGATGATATCCTCAATATAAAACTGACAATGTTTGTCTCAGGCTATAAGATG
AATCCGAAAATTGCCGAAAAATATAGTGTTTCGTGGGAATTTGTCGATGCGCCAAAATCAAGGGCAAACAGGGCGTTAAA
ATCAAGGGCATACAGGTTGGTCGGCGTTCCGAAGGCAGGGACGGGTTATACCTTGTCGGTATGGGTGAACAGCGTGGGCG
ACGGATACAAATGCCGTGATGCCGCTTCTGCCCAAGCCCATTTGGAGACTTTGTCCGCGGATGTCGGCTGTGAAGCCTTC
TCTAATCGTAAAAAATAA

Domains

Predicted by InterproScan.

Prokaryotic N-terminal methylation motif (N_methyl)

(3-25)

Minor type IV pilin, PilX (Pilin_PilX)

(31-165)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  pilL Neisseria gonorrhoeae MS11

82.424

100

0.824
  pilX Neisseria meningitidis 8013

80

100

0.8

Multiple sequence alignment