Detailed information    

insolico Bioinformatically predicted

Overview

Name   pilH   Type   Machinery gene
Locus tag   DE8555_RS04360 Genome accession   NZ_CP012393
Coordinates   834418..835092 (+) Length   224 a.a.
NCBI ID   WP_063399723.1    Uniprot ID   A0AAC9CPR4
Organism   Neisseria meningitidis strain DE8555     
Function   type IV pilus (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 829418..840092
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  DE8555_RS14960 - 830131..830238 (+) 108 Protein_816 IS5/IS1182 family transposase -
  DE8555_RS04340 (DE8555_0810) - 830283..830615 (+) 333 WP_002213854.1 hypothetical protein -
  DE8555_RS04345 (DE8555_0811) - 830946..831455 (+) 510 WP_063399725.1 isoprenylcysteine carboxyl methyltransferase family protein -
  DE8555_RS04350 (DE8555_0812) - 831953..832540 (-) 588 WP_002220670.1 superoxide dismutase -
  DE8555_RS04355 (DE8555_0813) dnaB 832703..834109 (+) 1407 WP_002220671.1 replicative DNA helicase -
  DE8555_RS04360 (DE8555_0814) pilH 834418..835092 (+) 675 WP_063399723.1 Tfp pilus assembly protein FimT/FimU Machinery gene
  DE8555_RS04365 (DE8555_0815) pilV 835116..835739 (+) 624 WP_063399721.1 type IV pilus modification protein PilV Machinery gene
  DE8555_RS04370 (DE8555_0816) pilJ 835736..836680 (+) 945 WP_063399719.1 PilW family protein Machinery gene
  DE8555_RS04375 (DE8555_0817) pilK 836659..837255 (+) 597 WP_002236356.1 PilX N-terminal domain-containing pilus assembly protein Machinery gene
  DE8555_RS04380 (DE8555_0818) pilL 837260..837757 (+) 498 WP_002235687.1 PilX family type IV pilin Machinery gene

Sequence

Protein


Download         Length: 224 a.a.        Molecular weight: 25204.91 Da        Isoelectric Point: 10.1641

>NTDB_id=154163 DE8555_RS04360 WP_063399723.1 834418..835092(+) (pilH) [Neisseria meningitidis strain DE8555]
MCTRKQQGFTLTELLIVMVIAAIMAMIALPNMSQWIASRRIASHAERIANLLRFSRGEAVRLNLPVYICPVQVKKDGAPN
NRCDFSKKGRGMLAFGDKNGNKAYDGDAADVFLRRVVLNDTDDSRINYAFNHIAFGSSQPTADRVVWTFNQNGTFGYTKD
QHLTSKSSFFYSDGYIQIVLTDARAVLDADKKFRSAVVLIDSSGRVEVCPRGDRRTRRTMCQYK

Nucleotide


Download         Length: 675 bp        

>NTDB_id=154163 DE8555_RS04360 WP_063399723.1 834418..835092(+) (pilH) [Neisseria meningitidis strain DE8555]
ATGTGTACACGAAAACAACAAGGTTTCACGCTAACAGAGCTGCTCATCGTGATGGTCATTGCAGCCATTATGGCGATGAT
AGCCCTCCCCAATATGAGCCAATGGATTGCATCCCGCCGCATTGCCAGTCACGCGGAGCGGATTGCCAACCTTTTGCGTT
TCTCCAGGGGCGAAGCCGTCCGGCTCAATCTCCCTGTCTATATCTGTCCTGTTCAAGTTAAAAAAGACGGTGCGCCCAAC
AATAGATGTGACTTCAGCAAGAAGGGGCGGGGAATGTTGGCTTTCGGCGACAAAAACGGCAATAAGGCATATGACGGCGA
TGCGGCGGATGTTTTCCTCCGCAGAGTGGTGTTGAATGATACCGACGACAGCCGGATTAATTATGCCTTCAACCATATCG
CTTTCGGTTCGTCTCAGCCGACCGCCGACCGTGTAGTTTGGACATTCAATCAAAACGGGACGTTCGGTTATACGAAAGAC
CAGCATCTTACAAGCAAATCCAGCTTTTTTTATTCCGACGGTTATATCCAAATCGTGCTGACAGATGCGAGAGCAGTTTT
AGATGCCGATAAGAAATTCCGTTCGGCGGTGGTTTTGATTGACAGCAGCGGCAGGGTCGAAGTTTGCCCTAGGGGTGATC
GGCGTACTCGGCGTACTATGTGCCAGTATAAATAA

Domains

Predicted by InterproScan.

Prokaryotic N-terminal methylation motif (N_methyl)

(4-29)

Type II transport protein GspH (GspH)

(44-204)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  pilH Neisseria gonorrhoeae MS11

89.302

95.982

0.857

Multiple sequence alignment