Detailed information    

insolico Bioinformatically predicted

Overview

Name   recB   Type   Machinery gene
Locus tag   DE8555_RS03905 Genome accession   NZ_CP012393
Coordinates   751334..754948 (-) Length   1204 a.a.
NCBI ID   WP_002248007.1    Uniprot ID   -
Organism   Neisseria meningitidis strain DE8555     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 746334..759948
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  DE8555_RS03885 (DE8555_0723) hemE 747429..748493 (+) 1065 WP_002247805.1 uroporphyrinogen decarboxylase -
  DE8555_RS03890 (DE8555_0724) radA 748671..750050 (+) 1380 WP_002241349.1 DNA repair protein RadA Machinery gene
  DE8555_RS03895 (DE8555_0726) - 750325..750804 (-) 480 WP_002224595.1 DUF302 domain-containing protein -
  DE8555_RS03900 (DE8555_0727) - 750936..751295 (-) 360 WP_002248006.1 rhodanese-like domain-containing protein -
  DE8555_RS03905 (DE8555_0728) recB 751334..754948 (-) 3615 WP_002248007.1 exodeoxyribonuclease V subunit beta Machinery gene
  DE8555_RS03910 (DE8555_0729) - 755181..756089 (-) 909 WP_002217584.1 Dyp-type peroxidase -
  DE8555_RS03915 (DE8555_0730) - 756374..757201 (+) 828 WP_002221189.1 amino acid ABC transporter substrate-binding protein -
  DE8555_RS03920 (DE8555_0731) - 757191..757907 (+) 717 WP_002213985.1 amino acid ABC transporter permease -
  DE8555_RS03925 (DE8555_0732) - 757917..758672 (+) 756 WP_002217580.1 amino acid ABC transporter ATP-binding protein -

Sequence

Protein


Download         Length: 1204 a.a.        Molecular weight: 134834.46 Da        Isoelectric Point: 5.4293

>NTDB_id=154162 DE8555_RS03905 WP_002248007.1 751334..754948(-) (recB) [Neisseria meningitidis strain DE8555]
MSAPIQAFDPLTVPIAGTNLIEASAGTGKTYGIAALFTRLIVLEQKNVERVLVVTFTKAATAELKTRLRARLDDVLQVLE
SKEIAKLGDDTLSDGIAAYCAEHHKGDTFLPALLKQALQKEGRTRLIVRLKAAIGQFDNAAIYTIHGFCQRILRDYAFLC
QAPFDVELTEEDGDRLLVPAQDFWRERVSNDPVLAALAFKRKAVPQTVLAQIRAYLSRPYLNFRRPQTDLPQARDAALAS
WQNICGNLAELKETFWRIHPLLNGNSYRKNSFAELFDALEQKALSPDLPFLEAKLHERLLKLASDKLEAGLKKGKTPDAA
VFAELQKLADFRRDLDALEEAEEATIIRLQLDLIGYLNRSLAEMKKSRRERGFDDLLLDVHTALTDNPHAETLARAVAEN
WETALIDEFQDTDPLQYEIFQKIFIAQNRPLFLVGDPKQAIYSFRGADIYAYLQAAEDARHRYTLATNYRSHAALIGSIG
ALFRLKERPFVLENIGYSEVGAARAESRLSPERPAVQVRWLHENDNEKANKDVLRRRAADYCADEIAHALNEAAECRLNF
KGCPLQSGDIAVLVRTHNEAVMVSAALKKRQVQSVLLSRESVFASPEAAALSALIGFWLEPRRAGTLRFVLTSGIFGYDA
QQLHDFNQNESEILHWAESARTALDNWNQYGIFAAMQQFSQTHGIETRLLSRNNGRSLTNYFQLLELLAAEDAQNRNPAA
LHKWLRDQISLAGNNSGDNRAIRLESDEDLVKIVTMHASKGLQYPLVYCPFAWDAQDTGPSDWQILHQSANRTELLAKAQ
LSEDEQKQYADEEMAERLRLLYVALTRAEEQLNIYAAYSSDTADNPLAYLIEGLPQDSRETVRQTYDWEKDGIAMLKRNW
RRLTDNAPAGTDFAFTEDAPPPAAYRGNAGQTAEFAANSIPERRFRFVRHTSFTALSRHTQTPDGGEEDACPSLDAAETS
VPAMPSETPTASDGISIHDFPKGTQAGLCLHEILEDFKFGQAAAGQETLIADKLKKYGFEEIWLPAVAEMAEACRKTPLT
GAYCLSDIPPECRCPEMGFTLHTEDFGLKRLRDWFARDDIRLPEVCRAAAETLDFHTVNGFLNGFIDMVCQDPDGNICVI
DYKSNHLGADASAYTQQAMDEAVAHHHYYLQALIYAVAAARYFKLRGQPPAAVSVRYLFLRGLDGKGGGVWRWDIDAAAL
EQIK

Nucleotide


Download         Length: 3615 bp        

>NTDB_id=154162 DE8555_RS03905 WP_002248007.1 751334..754948(-) (recB) [Neisseria meningitidis strain DE8555]
ATGTCTGCACCCATCCAAGCATTTGACCCGCTGACCGTCCCCATTGCCGGCACCAACCTGATTGAGGCCTCTGCCGGCAC
CGGAAAAACCTACGGCATTGCCGCCCTGTTTACGCGCCTGATCGTATTGGAACAAAAAAACGTCGAGCGCGTATTGGTCG
TTACCTTCACCAAAGCCGCCACCGCCGAGTTGAAAACACGCCTGCGCGCACGTTTGGACGATGTGTTGCAGGTTTTAGAA
AGTAAAGAAATTGCCAAACTTGGAGACGACACGCTTTCAGACGGCATCGCCGCCTACTGCGCCGAACACCACAAAGGCGA
CACCTTCCTGCCCGCACTCTTAAAACAGGCTTTGCAAAAAGAGGGCCGGACGCGTCTGATTGTCCGCCTCAAAGCCGCCA
TCGGGCAATTCGACAACGCCGCCATCTATACCATCCACGGCTTCTGCCAGCGCATCCTGCGCGACTACGCGTTTTTGTGC
CAAGCACCGTTCGATGTCGAACTGACCGAAGAAGACGGCGACCGCCTGCTTGTCCCGGCGCAAGATTTTTGGCGGGAACG
CGTCAGCAATGATCCGGTGCTTGCCGCATTGGCGTTTAAACGCAAAGCTGTGCCGCAAACCGTCCTTGCCCAAATCCGCG
CCTACCTGTCCCGCCCGTACCTGAATTTCCGCCGTCCGCAAACAGATTTGCCGCAAGCCCGGGATGCCGCTTTGGCAAGC
TGGCAAAACATTTGCGGAAATCTGGCTGAATTAAAAGAAACTTTTTGGCGCATCCATCCCCTTTTAAACGGCAATTCATA
TCGGAAAAACAGTTTTGCCGAACTGTTTGACGCATTGGAACAAAAAGCCCTGTCGCCGGATTTGCCCTTTTTGGAGGCAA
AGCTGCACGAACGGCTCTTGAAACTTGCGTCCGACAAACTCGAAGCCGGACTGAAAAAAGGCAAAACGCCCGATGCGGCA
GTATTTGCCGAATTGCAGAAACTGGCAGACTTCAGGCGTGATTTGGACGCACTCGAAGAAGCGGAAGAAGCAACAATAAT
CCGGCTGCAACTGGATTTAATCGGATACCTCAACCGCAGCCTTGCCGAGATGAAAAAATCGCGCCGCGAACGCGGTTTCG
ACGACCTGCTGCTCGATGTCCACACCGCGCTGACCGACAATCCGCACGCCGAAACCCTCGCCCGCGCCGTTGCCGAAAAC
TGGGAAACCGCGCTGATCGACGAGTTCCAAGACACCGACCCGCTGCAATACGAAATCTTCCAAAAAATCTTCATCGCCCA
AAACCGACCGCTGTTCCTCGTCGGCGATCCCAAACAGGCGATTTACAGCTTTCGCGGAGCGGACATTTACGCCTACCTTC
AGGCGGCGGAAGACGCGCGGCACCGCTACACGCTCGCCACCAACTACCGCAGCCACGCCGCGCTTATCGGCAGCATAGGC
GCGCTGTTCCGCCTCAAAGAACGCCCGTTCGTTTTGGAAAACATCGGCTATTCGGAAGTCGGTGCGGCGCGTGCCGAAAG
CAGGTTGTCCCCCGAACGTCCTGCCGTACAGGTTCGTTGGCTGCACGAAAACGACAATGAAAAAGCCAACAAAGACGTTT
TGCGCCGCCGTGCCGCCGACTATTGCGCCGACGAAATCGCCCACGCGCTCAACGAAGCCGCCGAATGCCGTCTGAATTTC
AAAGGCTGCCCGTTGCAGTCGGGCGATATTGCCGTGCTGGTACGCACGCACAACGAGGCGGTGATGGTTTCCGCTGCCCT
GAAAAAACGGCAGGTGCAAAGCGTCCTGCTTTCGCGCGAATCCGTGTTCGCCTCGCCCGAAGCCGCCGCCCTTTCCGCAC
TCATCGGCTTCTGGCTCGAACCGCGCCGCGCCGGAACGCTGCGCTTTGTCCTGACAAGCGGCATATTCGGTTATGACGCG
CAGCAATTGCACGACTTCAACCAAAACGAAAGCGAGATTTTGCATTGGGCGGAATCTGCCCGAACCGCGCTCGACAACTG
GAATCAATACGGCATTTTCGCCGCCATGCAGCAATTTTCCCAAACACACGGCATCGAAACGCGCCTCTTAAGCCGGAACA
ACGGGCGCAGCCTGACCAATTATTTCCAACTGCTCGAACTGCTTGCCGCCGAAGACGCGCAAAACCGCAACCCCGCCGCG
CTGCACAAATGGTTGCGCGACCAAATCAGCCTGGCCGGCAACAACAGCGGCGACAACCGCGCCATCCGTCTGGAAAGCGA
CGAAGATTTGGTCAAAATCGTTACCATGCACGCCTCGAAAGGTTTGCAGTATCCGCTGGTGTACTGCCCGTTTGCGTGGG
ACGCGCAAGATACCGGGCCGTCCGACTGGCAAATCCTCCACCAAAGCGCAAATCGAACCGAACTGTTGGCAAAGGCGCAA
CTGTCGGAAGACGAACAGAAGCAATACGCCGATGAGGAAATGGCGGAACGCCTGCGCCTGCTTTATGTCGCGCTGACGCG
TGCCGAGGAACAGCTCAACATCTACGCCGCCTATTCTTCCGATACCGCCGACAACCCCCTCGCCTACCTGATTGAAGGCT
TGCCGCAAGACAGCCGCGAAACCGTCCGCCAAACCTATGACTGGGAAAAAGACGGCATCGCGATGCTCAAACGCAACTGG
CGGCGTTTGACGGACAATGCCCCGGCCGGCACGGATTTCGCCTTCACAGAAGATGCGCCGCCCCCTGCCGCCTATCGCGG
CAACGCCGGTCAAACCGCCGAATTTGCCGCAAACAGCATTCCCGAACGCAGATTCCGATTTGTCCGCCACACCAGCTTTA
CCGCCTTAAGCCGCCATACCCAAACGCCCGACGGCGGCGAAGAAGATGCCTGCCCGTCCTTGGATGCCGCCGAAACCTCG
GTGCCGGCGATGCCGTCTGAAACGCCGACGGCTTCAGACGGCATATCGATACACGATTTTCCGAAAGGCACGCAGGCGGG
GCTGTGCCTGCACGAAATTCTTGAAGATTTCAAATTCGGACAAGCAGCCGCCGGACAGGAAACTCTCATTGCCGACAAGC
TGAAAAAATACGGATTTGAAGAAATATGGCTGCCTGCCGTTGCCGAAATGGCGGAAGCCTGCCGCAAAACGCCGCTGACG
GGGGCATACTGCCTGTCCGACATCCCGCCCGAGTGCCGCTGTCCCGAAATGGGCTTTACCCTCCACACCGAAGACTTCGG
CCTCAAACGGCTGCGCGACTGGTTTGCCCGCGACGATATCCGATTGCCCGAAGTCTGCCGTGCCGCCGCCGAAACGCTCG
ACTTCCACACCGTCAACGGCTTTTTAAACGGCTTTATCGATATGGTCTGCCAAGACCCCGACGGCAATATCTGCGTCATC
GACTACAAATCAAACCATCTCGGCGCGGACGCATCCGCCTACACGCAACAGGCGATGGACGAAGCCGTCGCGCACCACCA
CTATTACCTTCAGGCGCTGATTTACGCCGTTGCCGCCGCACGCTACTTCAAACTGCGCGGACAACCGCCCGCCGCCGTTT
CCGTCCGCTACCTGTTTTTGCGCGGATTGGATGGCAAAGGCGGCGGCGTTTGGCGTTGGGACATAGATGCCGCCGCTTTG
GAACAGATAAAATAA

Domains

Predicted by InterproScan.

UvrD-like helicase C-terminal domain (UvrD_C)

(463-651)

PD-(D/E)XK nuclease superfamily (PDDEXK_1)

(1069-1182)

UvrD/REP helicase N-terminal domain (UvrD-helicase)

(15-458)

UvrD-like helicase C-terminal domain (UvrD_C)

(740-835)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  recB Neisseria gonorrhoeae strain FA1090

92.691

100

0.927

Multiple sequence alignment