Detailed information    

insolico Bioinformatically predicted

Overview

Name   radA   Type   Machinery gene
Locus tag   DE8555_RS03890 Genome accession   NZ_CP012393
Coordinates   748671..750050 (+) Length   459 a.a.
NCBI ID   WP_002241349.1    Uniprot ID   A0AAC9CQG8
Organism   Neisseria meningitidis strain DE8555     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 743671..755050
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  DE8555_RS03870 (DE8555_0720) - 744051..744791 (+) 741 WP_002224600.1 uroporphyrinogen-III synthase -
  DE8555_RS03875 (DE8555_0721) - 744806..746140 (+) 1335 WP_002234771.1 uroporphyrinogen-III C-methyltransferase -
  DE8555_RS03880 (DE8555_0722) - 746137..747354 (+) 1218 WP_002226492.1 heme biosynthesis protein HemY -
  DE8555_RS03885 (DE8555_0723) hemE 747429..748493 (+) 1065 WP_002247805.1 uroporphyrinogen decarboxylase -
  DE8555_RS03890 (DE8555_0724) radA 748671..750050 (+) 1380 WP_002241349.1 DNA repair protein RadA Machinery gene
  DE8555_RS03895 (DE8555_0726) - 750325..750804 (-) 480 WP_002224595.1 DUF302 domain-containing protein -
  DE8555_RS03900 (DE8555_0727) - 750936..751295 (-) 360 WP_002248006.1 rhodanese-like domain-containing protein -
  DE8555_RS03905 (DE8555_0728) recB 751334..754948 (-) 3615 WP_002248007.1 exodeoxyribonuclease V subunit beta Machinery gene

Sequence

Protein


Download         Length: 459 a.a.        Molecular weight: 49593.09 Da        Isoelectric Point: 7.3293

>NTDB_id=154161 DE8555_RS03890 WP_002241349.1 748671..750050(+) (radA) [Neisseria meningitidis strain DE8555]
MAKTLKTLYQCTECGGTSPKWQGKCPHCGEWNTLQESLAAPEPKNARFQSWAADTSTVQSLSSVTATEVPRNPTGMGELD
RVLGGGLVDGAVILLGGDPGIGKSTLLLQTIAKMAQSRKVLYVSGEESAQQVALRAQRLELPTEGVNLLAEIRMEAIQTA
LKQHQPEVVVIDSIQTMYSDQITSAPGSVSQVRECAAQLTRMAKQMGIAMILVGHVTKDGAIAGPRVLEHMVDTVLYFEG
DQHSNYRMIRAIKNRFGAANELGVFAMTENGLKGVSNPSAIFLASYRDDTPGSCVLVTQEGSRPLLVEIQALVDDAHGFT
PKRLTVGLEQNRLAMLLAVLNRHGGIACFDQDVFLNAVGGVKIGEPAADLAVILAMLSSFRNRPMPEKTVVFGEIGLSGE
VRPVARGQERLKEAEKLGFKRAIVPKANMPRNAKEFPNLKIYGVSSLQEAIDICRDSRE

Nucleotide


Download         Length: 1380 bp        

>NTDB_id=154161 DE8555_RS03890 WP_002241349.1 748671..750050(+) (radA) [Neisseria meningitidis strain DE8555]
ATGGCAAAAACGCTTAAAACCCTTTACCAATGCACCGAATGCGGCGGCACTTCCCCGAAATGGCAGGGCAAATGCCCGCA
TTGCGGCGAGTGGAACACACTTCAGGAAAGCTTGGCCGCGCCCGAGCCGAAAAACGCCCGCTTCCAATCTTGGGCGGCGG
ATACCTCGACCGTCCAATCCCTCTCCTCTGTTACCGCGACCGAAGTGCCGCGCAATCCGACCGGTATGGGCGAACTCGAC
CGCGTATTGGGCGGCGGTTTGGTCGATGGTGCGGTCATCCTGCTCGGCGGCGATCCCGGCATCGGCAAATCCACGCTGCT
GTTGCAAACCATTGCCAAAATGGCGCAAAGCCGCAAAGTGCTGTACGTTTCCGGCGAGGAATCTGCCCAACAGGTCGCCC
TGCGCGCGCAACGTTTGGAACTGCCCACAGAAGGTGTGAACCTGCTTGCCGAAATCCGCATGGAGGCGATTCAGACGGCC
TTGAAACAGCATCAGCCCGAGGTCGTCGTCATCGACTCCATCCAAACCATGTATTCCGACCAAATCACTTCCGCCCCAGG
CTCCGTGTCGCAGGTGCGCGAGTGTGCCGCCCAACTGACGCGCATGGCGAAACAGATGGGCATCGCCATGATACTGGTCG
GACACGTGACCAAAGACGGCGCGATTGCCGGCCCGCGCGTGCTGGAACACATGGTTGATACCGTGCTGTATTTCGAGGGC
GACCAACATTCCAACTACCGCATGATACGCGCCATCAAAAACCGCTTCGGCGCGGCAAACGAACTGGGCGTGTTCGCGAT
GACGGAAAACGGTTTGAAAGGTGTGTCCAACCCGTCCGCCATCTTCCTCGCCAGCTACCGCGACGATACGCCCGGCTCGT
GCGTTTTGGTTACACAGGAAGGCAGCCGCCCGCTTTTGGTCGAAATTCAGGCATTGGTCGATGACGCGCACGGCTTCACG
CCCAAACGCCTCACCGTCGGACTGGAACAAAACCGTCTTGCGATGCTGCTTGCCGTGTTAAACCGCCACGGCGGCATCGC
CTGTTTCGATCAGGATGTGTTCCTCAACGCCGTCGGCGGCGTGAAAATCGGCGAACCGGCGGCGGATTTGGCGGTCATCC
TCGCGATGCTTTCCAGCTTCCGCAACCGCCCTATGCCTGAAAAAACCGTGGTTTTCGGCGAAATCGGCTTAAGCGGCGAA
GTCCGCCCCGTCGCACGCGGGCAAGAGCGGCTCAAAGAAGCGGAAAAACTCGGCTTCAAACGCGCCATCGTTCCCAAAGC
CAATATGCCGCGCAACGCCAAAGAGTTTCCGAACCTGAAAATCTACGGCGTTTCGAGTTTGCAGGAAGCCATCGATATTT
GCCGTGACAGCAGGGAATAA

Domains

Predicted by InterproScan.

Rubredoxin metal binding domain (Zn_ribbon_LapB)

(9-36)

Subunit ChlI of Mg-chelatase (ChlI)

(366-428)

AAA domain (AAA_25)

(80-220)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  radA Bacillus subtilis subsp. subtilis str. 168

50.33

99.129

0.499
  radA Streptococcus mitis NCTC 12261

47.672

98.257

0.468
  radA Streptococcus pneumoniae Rx1

47.345

98.475

0.466
  radA Streptococcus pneumoniae D39

47.345

98.475

0.466
  radA Streptococcus pneumoniae R6

47.345

98.475

0.466
  radA Streptococcus pneumoniae TIGR4

47.345

98.475

0.466
  radA Streptococcus mitis SK321

47.228

98.257

0.464

Multiple sequence alignment