Detailed information    

insolico Bioinformatically predicted

Overview

Name   comFC/cflB   Type   Machinery gene
Locus tag   A6M16_RS02205 Genome accession   NZ_CP015557
Coordinates   422503..423168 (+) Length   221 a.a.
NCBI ID   WP_024389594.1    Uniprot ID   -
Organism   Streptococcus suis strain DN13     
Function   ssDNA transport into the cell (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 417503..428168
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  A6M16_RS02180 (A6M16_02180) - 417714..419114 (+) 1401 WP_014637530.1 bifunctional Cof-type HAD-IIB family hydrolase/peptidylprolyl isomerase -
  A6M16_RS02185 (A6M16_02185) - 419116..419487 (+) 372 WP_002937017.1 S1 RNA-binding domain-containing protein -
  A6M16_RS02190 (A6M16_02190) cysK 419513..420439 (-) 927 WP_015646509.1 cysteine synthase A -
  A6M16_RS02195 (A6M16_02195) - 420529..421161 (-) 633 WP_024389592.1 YigZ family protein -
  A6M16_RS02200 (A6M16_02200) comFA/cflA 421218..422510 (+) 1293 WP_024395771.1 DEAD/DEAH box helicase Machinery gene
  A6M16_RS02205 (A6M16_02205) comFC/cflB 422503..423168 (+) 666 WP_024389594.1 ComF family protein Machinery gene
  A6M16_RS02210 (A6M16_02210) hpf 423245..423787 (+) 543 WP_004194117.1 ribosome hibernation-promoting factor, HPF/YfiA family -

Sequence

Protein


Download         Length: 221 a.a.        Molecular weight: 25777.64 Da        Isoelectric Point: 8.4541

>NTDB_id=154145 A6M16_RS02205 WP_024389594.1 422503..423168(+) (comFC/cflB) [Streptococcus suis strain DN13]
MSNCLLCGQAMKNKTRFSDLIFFSKEKSGICEECFSTFEEIAEQHCPHCYKNGELESCKDCQYWQNQGKPVVHTALYQYN
QAMAHYFSRYKFQGDYVLRNIFAKKLRIALSQFTDYTIVPIPISQKRLSERGFNQVEGLLNATNIPYQSLLGKYESQKQS
SKNRAERLEAKQMFYLLDEKEVPEKILLFDDIYTTGATIQLAVELFMKIGRKEIKTFSLTR

Nucleotide


Download         Length: 666 bp        

>NTDB_id=154145 A6M16_RS02205 WP_024389594.1 422503..423168(+) (comFC/cflB) [Streptococcus suis strain DN13]
ATGTCTAATTGTCTATTGTGCGGTCAAGCTATGAAAAATAAAACAAGATTTTCAGATCTCATCTTCTTTAGTAAAGAAAA
ATCGGGCATCTGTGAAGAATGTTTTTCAACTTTTGAGGAAATAGCAGAGCAACACTGTCCACATTGTTATAAAAATGGAG
AATTGGAAAGTTGCAAGGATTGTCAGTACTGGCAGAATCAAGGGAAACCAGTTGTCCACACAGCTTTGTACCAATATAAT
CAAGCGATGGCACATTATTTTAGTCGCTATAAATTTCAAGGAGACTATGTTTTAAGAAATATTTTTGCTAAAAAGCTTAG
AATAGCGTTAAGCCAATTTACTGACTACACAATTGTTCCTATACCAATTAGTCAAAAACGACTATCAGAACGCGGTTTTA
ATCAAGTGGAAGGACTTTTGAATGCTACAAATATTCCCTACCAGTCCCTTCTTGGAAAGTATGAAAGCCAAAAACAATCA
TCTAAAAATCGTGCAGAGAGACTAGAAGCAAAACAGATGTTCTATCTATTAGATGAAAAAGAAGTGCCAGAAAAAATATT
ATTATTCGACGATATATATACAACAGGAGCTACAATCCAACTTGCTGTAGAACTTTTCATGAAAATTGGTAGGAAAGAAA
TCAAAACATTTTCACTAACACGATAA

Domains


No domain identified.



Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comFC/cflB Streptococcus mitis SK321

48.624

98.643

0.48
  comFC/cflB Streptococcus pneumoniae TIGR4

48.624

98.643

0.48
  comFC/cflB Streptococcus pneumoniae Rx1

48.624

98.643

0.48
  comFC/cflB Streptococcus pneumoniae D39

48.624

98.643

0.48
  comFC/cflB Streptococcus pneumoniae R6

48.624

98.643

0.48
  comFC/cflB Streptococcus mitis NCTC 12261

48.624

98.643

0.48

Multiple sequence alignment