Detailed information    

insolico Bioinformatically predicted

Overview

Name   pilH   Type   Machinery gene
Locus tag   amyaer_RS16410 Genome accession   NZ_CP012375
Coordinates   3330791..3331156 (+) Length   121 a.a.
NCBI ID   WP_046662875.1    Uniprot ID   A0A0F6U5Z1
Organism   Microcystis aeruginosa NIES-2481     
Function   type IV pilus biogenesis and function (predicted from homology)   
DNA binding and uptake

Related MGE

Note: This gene co-localizes with putative mobile genetic elements (MGEs) in the genome predicted by VRprofile2, as detailed below.

Gene-MGE association summary

MGE type MGE coordinates Gene coordinates Relative position Distance (bp)
IS/Tn 3331339..3332562 3330791..3331156 flank 183


Gene organization within MGE regions


Location: 3330791..3332562
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  amyaer_RS16410 (amyaer_3413) pilH 3330791..3331156 (+) 366 WP_046662875.1 response regulator Machinery gene
  amyaer_RS16415 (amyaer_3414) - 3331339..3332562 (+) 1224 WP_046662876.1 RNA-guided endonuclease TnpB family protein -

Sequence

Protein


Download         Length: 121 a.a.        Molecular weight: 13909.46 Da        Isoelectric Point: 8.1163

>NTDB_id=153947 amyaer_RS16410 WP_046662875.1 3330791..3331156(+) (pilH) [Microcystis aeruginosa NIES-2481]
MREILLVEDSQAQRELICDLLRNSGIKVTIAKDGVEALEHIQRVNPDLVVLDIVMPRINGYEVCRRLKSDPKTKNIPVII
CSLKGEVFDRYWGMKIGADAYIVKPFEPIEFICTVKQLLRR

Nucleotide


Download         Length: 366 bp        

>NTDB_id=153947 amyaer_RS16410 WP_046662875.1 3330791..3331156(+) (pilH) [Microcystis aeruginosa NIES-2481]
ATGAGAGAAATATTGCTGGTAGAAGACAGCCAAGCGCAACGGGAACTGATCTGTGATCTGCTCCGCAATAGCGGCATTAA
GGTCACGATCGCCAAAGATGGGGTGGAGGCCCTCGAACATATTCAGAGAGTCAATCCCGATCTCGTCGTCCTCGATATCG
TCATGCCCCGCATCAATGGTTATGAGGTATGTCGTCGTCTCAAGTCGGATCCCAAAACCAAAAATATCCCCGTGATCATT
TGTTCCTTGAAAGGGGAAGTCTTTGATCGCTATTGGGGCATGAAAATCGGAGCCGATGCCTACATTGTCAAACCCTTTGA
ACCGATTGAGTTCATTTGCACTGTTAAACAACTGCTGCGCCGATAA

Domains

Predicted by InterproScan.

Response regulator receiver domain (Response_reg)

(4-112)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A0A0F6U5Z1

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  pilH Synechocystis sp. PCC 6803

70

99.174

0.694
  vicR Streptococcus mutans UA159

38.017

100

0.38
  micA Streptococcus pneumoniae Cp1015

37.19

100

0.372
  pilG Acinetobacter baumannii strain A118

38.261

95.041

0.364

Multiple sequence alignment