Detailed information    

insolico Bioinformatically predicted

Overview

Name   ysxA/radC   Type   Machinery gene
Locus tag   A4W82_RS04870 Genome accession   NZ_CP015487
Coordinates   931076..931750 (+) Length   224 a.a.
NCBI ID   WP_011374555.1    Uniprot ID   Q38XC8
Organism   Latilactobacillus sakei strain TMW 1.46     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 926076..936750
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  A4W82_RS04855 (A4W82_04785) - 926277..928925 (+) 2649 WP_016265024.1 valine--tRNA ligase -
  A4W82_RS04860 (A4W82_04790) - 929047..930351 (+) 1305 WP_016265025.1 folylpolyglutamate synthase/dihydrofolate synthase family protein -
  A4W82_RS04865 (A4W82_04795) - 930352..931002 (+) 651 WP_016265026.1 HAD family hydrolase -
  A4W82_RS04870 (A4W82_04800) ysxA/radC 931076..931750 (+) 675 WP_011374555.1 DNA repair protein RadC Machinery gene
  A4W82_RS04875 (A4W82_04805) - 931914..932918 (+) 1005 WP_011374556.1 rod shape-determining protein -
  A4W82_RS04880 (A4W82_04810) mreC 933076..933936 (+) 861 WP_011374557.1 rod shape-determining protein MreC -
  A4W82_RS04885 (A4W82_04815) mreD 933938..934468 (+) 531 WP_016265027.1 rod shape-determining protein MreD -
  A4W82_RS04890 (A4W82_04820) - 934485..935156 (+) 672 WP_251925954.1 septum site-determining protein MinC -
  A4W82_RS04895 (A4W82_04825) minD 935158..935952 (+) 795 WP_016265029.1 septum site-determining protein MinD -

Sequence

Protein


Download         Length: 224 a.a.        Molecular weight: 25083.87 Da        Isoelectric Point: 6.9595

>NTDB_id=153941 A4W82_RS04870 WP_011374555.1 931076..931750(+) (ysxA/radC) [Latilactobacillus sakei strain TMW 1.46]
MLTSQSKLQPREQVALYGAASLSDEQLATVILRSGTQHLPVEVVAQRLLQRYPDFQDLEQADLVQLRQIEGIGPVKAIEL
QAICELSRRIQNQRTLRFGVVASSQMVGQRMIESLAGETQEQLLAVYLDVKNQIIQIKQLYLGTLNSSVAHPREVFKWAV
QYSAAKFILVHNHPSGQLAPSTQDINFTKRIVNCGQLMGITCLDHLIIGSSQYLSLREEGYLVD

Nucleotide


Download         Length: 675 bp        

>NTDB_id=153941 A4W82_RS04870 WP_011374555.1 931076..931750(+) (ysxA/radC) [Latilactobacillus sakei strain TMW 1.46]
ATGTTAACGAGTCAATCAAAGTTACAACCCAGAGAGCAAGTCGCACTGTATGGTGCGGCCAGTCTAAGTGATGAACAATT
AGCAACCGTAATTTTACGTTCAGGCACCCAACATTTACCCGTTGAAGTCGTTGCACAACGATTATTGCAACGCTATCCCG
ACTTTCAAGATCTTGAACAAGCGGACTTAGTACAATTACGTCAAATCGAAGGTATTGGACCGGTTAAAGCGATTGAACTC
CAAGCGATTTGTGAGTTAAGTCGGCGCATTCAAAATCAGCGGACATTACGTTTTGGTGTAGTGGCTTCTAGTCAGATGGT
AGGCCAACGGATGATTGAATCCTTAGCGGGAGAGACACAAGAACAGCTATTAGCGGTCTATTTAGATGTTAAAAATCAGA
TTATTCAGATTAAGCAACTCTATCTGGGTACACTTAATAGTTCTGTTGCACATCCGCGGGAAGTCTTTAAATGGGCGGTT
CAGTATTCAGCGGCTAAGTTTATCTTGGTCCATAATCACCCGAGCGGTCAATTGGCACCATCAACGCAAGATATTAACTT
TACAAAAAGAATTGTTAATTGCGGACAGTTGATGGGGATTACTTGTTTGGATCATTTAATCATTGGTAGCTCACAGTACT
TAAGCCTACGTGAAGAAGGGTATCTAGTCGATTAA

Domains

Predicted by InterProScan.

UPF0758 N-terminal (UPF0758_N)

(7-78)

RadC-like JAB domain (RadC)

(103-220)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB Q38XC8

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  ysxA/radC Bacillus subtilis subsp. subtilis str. 168

43.056

96.429

0.415
  radC Streptococcus pneumoniae TIGR4

41.553

97.768

0.406
  radC Streptococcus pneumoniae R6

41.096

97.768

0.402
  radC Streptococcus pneumoniae D39

41.096

97.768

0.402
  radC Streptococcus gordonii str. Challis substr. CH1

38.356

97.768

0.375