Detailed information    

insolico Bioinformatically predicted

Overview

Name   pilM   Type   Machinery gene
Locus tag   AL038_RS09925 Genome accession   NZ_CP012373
Coordinates   2383532..2384617 (-) Length   361 a.a.
NCBI ID   WP_062152374.1    Uniprot ID   -
Organism   Beggiatoa leptomitoformis strain D-402     
Function   assembly of type IV pilus (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 2378532..2389617
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  AL038_RS09905 (AL038_09830) pilQ 2379290..2381389 (-) 2100 WP_062152366.1 type IV pilus secretin family protein -
  AL038_RS09910 (AL038_09835) - 2381487..2382044 (-) 558 WP_062152368.1 pilus assembly protein PilP -
  AL038_RS09915 (AL038_09840) - 2382187..2382828 (-) 642 WP_083991489.1 type 4a pilus biogenesis protein PilO -
  AL038_RS09920 (AL038_09845) - 2382833..2383477 (-) 645 WP_062152372.1 PilN domain-containing protein -
  AL038_RS09925 (AL038_09850) pilM 2383532..2384617 (-) 1086 WP_062152374.1 pilus assembly protein PilM Machinery gene
  AL038_RS09930 (AL038_09855) - 2384758..2387352 (+) 2595 WP_062152376.1 penicillin-binding protein 1A -
  AL038_RS09935 (AL038_09860) plsY 2387354..2387968 (+) 615 WP_062152378.1 glycerol-3-phosphate 1-O-acyltransferase PlsY -
  AL038_RS09940 (AL038_09865) - 2388038..2388786 (+) 749 WP_101539186.1 IS5 family transposase -

Sequence

Protein


Download         Length: 361 a.a.        Molecular weight: 39617.20 Da        Isoelectric Point: 4.6336

>NTDB_id=153921 AL038_RS09925 WP_062152374.1 2383532..2384617(-) (pilM) [Beggiatoa leptomitoformis strain D-402]
MGIFSLKPEPLVGIDISSTAVKLLELSRAGNNYKVESYAIEPLPEKAVEDKNVVELETVGEAISRVVRRAKPKAQFSAVA
VSGPAVITKIIEMDKGMSDDERRALIEADAEQYIPYPLDEISFDFEVIGPNDKDPETRMDVLLAASRSENVEIRIASAEL
GGLKVRVVDIEKYALENAFRLLAESDPEINVDETIGLVDVGATTTTINVLGNNKIVYSREELFGGKRLTENIQHRYGISY
EEANLAKRNGGLPDDYEIEVLEPFKAEMAQQISRMVQYYYSSDASPKYGQLSHILIAGGCASIPGIIEHVSNKVGGHVTI
ANPFASMSLSAKVPKKDLMRDAPALMIACGLALRTFDKFNY

Nucleotide


Download         Length: 1086 bp        

>NTDB_id=153921 AL038_RS09925 WP_062152374.1 2383532..2384617(-) (pilM) [Beggiatoa leptomitoformis strain D-402]
GTGGGAATCTTTAGTTTAAAGCCTGAACCGCTGGTGGGCATAGATATAAGCTCTACAGCCGTTAAACTACTTGAACTCAG
CCGAGCGGGTAATAACTACAAGGTTGAGAGTTACGCGATAGAACCCTTGCCAGAAAAAGCGGTAGAGGATAAAAACGTCG
TCGAACTAGAAACTGTTGGTGAGGCCATTAGTCGTGTTGTTCGCCGTGCTAAGCCAAAAGCACAGTTTTCTGCGGTTGCT
GTTTCTGGTCCTGCCGTGATTACCAAAATCATCGAAATGGACAAAGGCATGTCAGATGATGAACGACGCGCCCTGATTGA
AGCCGATGCTGAGCAATATATCCCTTACCCCTTAGACGAAATCAGCTTTGACTTTGAGGTTATTGGTCCTAATGATAAAG
ACCCTGAGACACGCATGGATGTTCTTTTAGCTGCCTCGCGTAGTGAAAATGTTGAAATACGCATTGCAAGTGCAGAACTG
GGTGGATTAAAAGTCAGGGTCGTGGACATTGAAAAGTATGCACTCGAAAATGCGTTTCGTCTATTGGCAGAAAGCGATCC
TGAAATTAACGTGGATGAAACCATTGGTTTAGTCGATGTAGGTGCAACAACCACAACGATTAATGTATTAGGGAATAATA
AGATTGTCTATTCGCGTGAAGAGTTATTTGGTGGTAAACGACTCACCGAAAATATTCAGCATCGTTATGGTATTAGTTAT
GAAGAAGCCAACTTAGCAAAGCGTAACGGTGGATTGCCAGACGATTATGAAATTGAAGTATTAGAACCCTTTAAAGCAGA
AATGGCACAACAAATTAGCCGTATGGTGCAATATTACTATTCATCAGATGCTTCTCCGAAATATGGGCAGTTATCACATA
TTCTCATCGCGGGTGGTTGTGCGTCCATTCCGGGCATTATAGAACATGTCAGTAATAAGGTTGGAGGGCATGTCACGATT
GCAAATCCTTTCGCTTCCATGTCGTTATCCGCTAAAGTTCCTAAGAAGGATTTAATGCGCGATGCCCCTGCATTAATGAT
TGCATGTGGGTTAGCATTGCGGACTTTTGACAAATTTAATTATTGA

Domains

Predicted by InterproScan.

Type IV pilus assembly protein PilM; (PilM_2)

(13-356)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  pilM Acinetobacter baumannii D1279779

51.009

96.122

0.49
  comM Acinetobacter nosocomialis M2

51.009

96.122

0.49
  comM Acinetobacter baylyi ADP1

49.138

96.399

0.474
  pilM Legionella pneumophila strain ERS1305867

41.88

97.23

0.407

Multiple sequence alignment