Detailed information    

insolico Bioinformatically predicted

Overview

Name   pilM   Type   Machinery gene
Locus tag   P40_RS19555 Genome accession   NZ_CP012331
Coordinates   4205030..4206064 (-) Length   344 a.a.
NCBI ID   WP_022995169.1    Uniprot ID   -
Organism   Alloalcanivorax xenomutans strain P40     
Function   assembly of type IV pilus (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 4200030..4211064
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  P40_RS19530 (P40_19315) aroK 4200521..4201012 (-) 492 WP_022995174.1 shikimate kinase AroK -
  P40_RS19535 (P40_19320) pilQ 4201054..4203204 (-) 2151 WP_022995173.1 type IV pilus secretin PilQ Machinery gene
  P40_RS19540 (P40_19325) - 4203225..4203758 (-) 534 WP_022995172.1 pilus assembly protein PilP -
  P40_RS19545 (P40_19330) pilO 4203776..4204462 (-) 687 WP_022995171.1 type 4a pilus biogenesis protein PilO -
  P40_RS19550 (P40_19335) - 4204449..4205033 (-) 585 WP_022995170.1 PilN domain-containing protein -
  P40_RS19555 (P40_19340) pilM 4205030..4206064 (-) 1035 WP_022995169.1 pilus assembly protein PilM Machinery gene
  P40_RS19560 (P40_19345) - 4206432..4208957 (+) 2526 WP_022995168.1 penicillin-binding protein 1A -
  P40_RS19565 (P40_19350) - 4208988..4210283 (-) 1296 WP_233917847.1 DKNYY domain-containing protein -

Sequence

Protein


Download         Length: 344 a.a.        Molecular weight: 37119.27 Da        Isoelectric Point: 4.2755

>NTDB_id=153553 P40_RS19555 WP_022995169.1 4205030..4206064(-) (pilM) [Alloalcanivorax xenomutans strain P40]
MLGVDISSTAVKLLELSRSGGRFKVESYAVEPLTANTVVEKNITDVEGVGDVIARVVARARPGVKAAAVAVPGSATITKV
IEMDASLSEDDMETQLRVEADQYIPFPLDEVRMDFQVLGATEDTPDRVEVLVVASRTENVEMRADALEIGNLQAKVVDVE
AYAMERAFQLVAPTLPNADELETVAVFDIGATMTTLNVFHQGRSVYTREQLFGGKQLTEEIQRRYGISMEEAGLAKKTGE
LPEDYESEVLQPFKDAIVQQINRSLQFFYGSTQFNQVDYILLAGGSASITGLPALIQDKVGAGCSLADPFAGMSKAGKVN
VRALANDAPAMMIACGLALRSFEL

Nucleotide


Download         Length: 1035 bp        

>NTDB_id=153553 P40_RS19555 WP_022995169.1 4205030..4206064(-) (pilM) [Alloalcanivorax xenomutans strain P40]
ATGCTGGGGGTCGATATCAGTTCCACCGCCGTGAAGCTGCTGGAGCTATCCAGGTCCGGGGGGCGCTTCAAGGTCGAGAG
CTACGCCGTCGAGCCGCTCACGGCCAATACCGTGGTGGAAAAAAACATCACCGATGTGGAAGGGGTCGGGGACGTGATCG
CCCGGGTGGTCGCCCGGGCCCGTCCCGGGGTCAAGGCCGCTGCCGTGGCGGTGCCGGGCTCCGCCACCATCACCAAGGTG
ATCGAAATGGACGCCTCGCTCAGCGAGGACGATATGGAAACGCAATTGCGGGTGGAGGCGGACCAGTACATTCCATTCCC
GCTGGATGAAGTGCGCATGGATTTTCAGGTGCTCGGCGCCACCGAGGATACGCCCGACCGGGTGGAAGTTCTGGTGGTGG
CGTCGCGCACGGAAAATGTGGAGATGCGCGCCGATGCTCTGGAGATCGGTAACCTTCAGGCCAAGGTGGTGGACGTGGAG
GCCTACGCCATGGAGCGGGCCTTCCAACTGGTGGCGCCGACCCTGCCCAACGCCGATGAACTGGAAACGGTGGCGGTGTT
CGATATCGGCGCCACCATGACCACTCTCAATGTGTTCCATCAGGGGCGCAGCGTCTATACCCGCGAGCAACTGTTCGGCG
GCAAGCAGCTCACCGAGGAAATTCAGCGCCGTTACGGCATCTCCATGGAGGAGGCCGGGCTGGCGAAGAAAACCGGTGAA
TTGCCTGAGGACTATGAGAGCGAGGTGCTGCAGCCGTTCAAGGACGCCATCGTCCAGCAGATCAACCGGTCCCTGCAGTT
CTTCTATGGATCCACCCAGTTCAATCAGGTGGATTACATCCTGCTGGCTGGCGGTTCGGCTTCCATCACCGGATTGCCGG
CGCTGATCCAGGACAAGGTGGGTGCCGGGTGTTCCCTGGCCGATCCCTTCGCCGGTATGAGCAAGGCCGGCAAGGTCAAT
GTCCGGGCCCTGGCCAACGACGCCCCGGCGATGATGATCGCCTGCGGCCTGGCGCTGAGGAGCTTTGAACTATGA

Domains

Predicted by InterproScan.

Type IV pilus assembly protein PilM; (PilM_2)

(3-342)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  pilM Acinetobacter baumannii D1279779

56.268

99.709

0.561
  comM Acinetobacter nosocomialis M2

56.268

99.709

0.561
  comM Acinetobacter baylyi ADP1

53.353

99.709

0.532
  pilM Legionella pneumophila strain ERS1305867

47.23

99.709

0.471

Multiple sequence alignment