Detailed information    

insolico Bioinformatically predicted

Overview

Name   ssbA   Type   Machinery gene
Locus tag   AKO66_RS00585 Genome accession   NZ_CP012330
Coordinates   109583..110125 (+) Length   180 a.a.
NCBI ID   WP_007497456.1    Uniprot ID   A0A5K1N7D0
Organism   Bacillus altitudinis strain NJ-V     
Function   ssDNA binding (predicted from homology)   
DNA processing

Genomic Context

Location: 104583..115125
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  AKO66_RS00560 (AKO66_00555) - 105588..105998 (-) 411 WP_057078781.1 hypothetical protein -
  AKO66_RS00565 (AKO66_00560) - 106014..107333 (-) 1320 WP_035704112.1 phage hydrolase -
  AKO66_RS00570 (AKO66_00565) - 107628..107834 (+) 207 WP_008347561.1 DUF951 domain-containing protein -
  AKO66_RS00575 (AKO66_00570) ychF 108050..109150 (+) 1101 WP_007497458.1 redox-regulated ATPase YchF -
  AKO66_RS00580 (AKO66_00575) rpsF 109259..109546 (+) 288 WP_008347557.1 30S ribosomal protein S6 -
  AKO66_RS00585 (AKO66_00580) ssbA 109583..110125 (+) 543 WP_007497456.1 single-stranded DNA-binding protein SsbA Machinery gene
  AKO66_RS00590 (AKO66_00585) rpsR 110167..110406 (+) 240 WP_008347556.1 30S ribosomal protein S18 -
  AKO66_RS00595 (AKO66_00590) - 110606..111571 (+) 966 WP_048002637.1 ABC transporter ATP-binding protein -
  AKO66_RS00600 (AKO66_00595) - 111564..113081 (+) 1518 WP_017368461.1 ABC transporter permease/substrate-binding protein -
  AKO66_RS00605 (AKO66_00600) - 113271..114242 (+) 972 WP_007497450.1 ring-cleaving dioxygenase -
  AKO66_RS00610 (AKO66_00605) - 114239..114850 (+) 612 WP_057078783.1 alpha/beta hydrolase -

Sequence

Protein


Download         Length: 180 a.a.        Molecular weight: 19605.15 Da        Isoelectric Point: 4.6109

>NTDB_id=153475 AKO66_RS00585 WP_007497456.1 109583..110125(+) (ssbA) [Bacillus altitudinis strain NJ-V]
MLNRVVLVGRLTKDPELRYTPNGAAVATFTLAVNRTFTNQSGEREADFINCVTWRRQAENVANFLKKGSLAGVDGRLQTR
NYENQQGQRVFVTEVQAESVQFLEPKSGGAGSGGYSGGGNSGGQYYGGSQNDQNPFGNEPSQNPYGNQNNQNRNQGNSFN
DDPFANDGKPIDISDDDLPF

Nucleotide


Download         Length: 543 bp        

>NTDB_id=153475 AKO66_RS00585 WP_007497456.1 109583..110125(+) (ssbA) [Bacillus altitudinis strain NJ-V]
ATGCTAAACCGTGTTGTATTGGTCGGAAGACTAACAAAAGACCCTGAGCTTCGCTACACGCCTAATGGTGCGGCTGTAGC
CACGTTTACTCTAGCTGTGAATCGTACGTTTACGAATCAATCTGGAGAGCGTGAAGCCGATTTCATTAACTGTGTTACTT
GGAGAAGACAAGCCGAGAACGTGGCTAATTTCTTGAAAAAAGGAAGTCTTGCCGGTGTAGACGGTCGCTTGCAGACAAGA
AACTATGAAAACCAGCAAGGACAGCGTGTCTTCGTGACAGAAGTTCAAGCTGAAAGTGTTCAATTTCTTGAGCCTAAAAG
CGGCGGTGCTGGTTCAGGTGGATACAGCGGCGGTGGCAATAGCGGAGGCCAGTATTATGGCGGCAGCCAAAATGATCAGA
ATCCATTTGGAAATGAACCAAGTCAAAATCCATATGGCAATCAAAACAACCAAAATCGTAATCAGGGAAATAGCTTCAAT
GATGACCCATTTGCGAATGATGGTAAACCGATTGACATCTCCGATGATGATTTGCCATTCTAA

Domains

Predicted by InterproScan.

Single-strand binding protein family (SSB)

(2-103)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A0A5K1N7D0

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  ssbA Bacillus subtilis subsp. subtilis str. 168

85.556

100

0.856
  ssb Latilactobacillus sakei subsp. sakei 23K

55.376

100

0.572
  ssbB Bacillus subtilis subsp. subtilis str. 168

64.151

58.889

0.378
  ssb Glaesserella parasuis strain SC1401

35.714

100

0.361

Multiple sequence alignment