Detailed information    

insolico Bioinformatically predicted

Overview

Name   comGC   Type   Machinery gene
Locus tag   AKO65_RS11895 Genome accession   NZ_CP012329
Coordinates   2371454..2371747 (+) Length   97 a.a.
NCBI ID   WP_057079311.1    Uniprot ID   -
Organism   Bacillus altitudinis strain NJ-M2     
Function   dsDNA binding to the cell surface; assembly of the pseudopilus (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 2366454..2376747
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  AKO65_RS11865 (AKO65_11865) - 2366958..2367200 (-) 243 WP_003217440.1 DUF2626 domain-containing protein -
  AKO65_RS11870 (AKO65_11870) - 2367413..2367793 (+) 381 WP_007501232.1 Spx/MgsR family RNA polymerase-binding regulatory protein -
  AKO65_RS11880 (AKO65_11880) - 2368019..2368888 (+) 870 WP_007501231.1 STAS domain-containing protein -
  AKO65_RS11885 (AKO65_11885) comGA 2369346..2370416 (+) 1071 WP_081038956.1 competence type IV pilus ATPase ComGA Machinery gene
  AKO65_RS11890 (AKO65_11890) comGB 2370397..2371437 (+) 1041 WP_057079310.1 competence type IV pilus assembly protein ComGB -
  AKO65_RS11895 (AKO65_11895) comGC 2371454..2371747 (+) 294 WP_057079311.1 competence type IV pilus major pilin ComGC Machinery gene
  AKO65_RS11900 (AKO65_11900) comGD 2371740..2372186 (+) 447 WP_057079312.1 competence type IV pilus minor pilin ComGD -
  AKO65_RS11905 (AKO65_11905) comGE 2372170..2372484 (+) 315 WP_057079313.1 competence type IV pilus minor pilin ComGE -
  AKO65_RS11910 (AKO65_11910) comGF 2372426..2372923 (+) 498 WP_057079314.1 competence type IV pilus minor pilin ComGF -
  AKO65_RS11915 (AKO65_11915) - 2372920..2373303 (+) 384 WP_057079315.1 competence type IV pilus minor pilin ComGG -
  AKO65_RS11920 (AKO65_11920) - 2373364..2373552 (+) 189 WP_017367591.1 YqzE family protein -
  AKO65_RS11925 (AKO65_11925) - 2373587..2373913 (-) 327 WP_048001387.1 DUF3889 domain-containing protein -
  AKO65_RS11930 (AKO65_11930) tapA 2374166..2374693 (+) 528 WP_017367589.1 amyloid fiber anchoring/assembly protein TapA -
  AKO65_RS11935 (AKO65_11935) sipW 2374744..2375316 (+) 573 WP_017357979.1 signal peptidase I SipW -
  AKO65_RS11940 (AKO65_11940) tasA 2375375..2376175 (+) 801 WP_008342195.1 biofilm matrix protein TasA -
  AKO65_RS11945 (AKO65_11945) sinR 2376243..2376578 (-) 336 WP_017357978.1 transcriptional regulator SinR Regulator

Sequence

Protein


Download         Length: 97 a.a.        Molecular weight: 10728.62 Da        Isoelectric Point: 6.7081

>NTDB_id=153443 AKO65_RS11895 WP_057079311.1 2371454..2371747(+) (comGC) [Bacillus altitudinis strain NJ-M2]
MNDKGFTLLEMLIVMLVISILLLITIPNITRHHQSIQAKGCEGLKSMVSTQVMAYELEHDGKTPSLAELEKEGYVKKGLT
CPNGKAIFLQNGDVKNE

Nucleotide


Download         Length: 294 bp        

>NTDB_id=153443 AKO65_RS11895 WP_057079311.1 2371454..2371747(+) (comGC) [Bacillus altitudinis strain NJ-M2]
ATGAATGATAAAGGATTTACACTGTTAGAAATGTTAATTGTCATGCTTGTGATCTCCATTCTTTTATTGATTACCATTCC
AAATATCACTCGGCATCATCAAAGCATTCAAGCAAAGGGCTGTGAAGGGCTGAAATCAATGGTGAGTACACAGGTAATGG
CATATGAATTAGAGCATGATGGCAAGACGCCATCTTTAGCTGAATTAGAAAAAGAAGGCTATGTCAAAAAGGGATTAACT
TGTCCGAATGGAAAGGCAATTTTTCTTCAAAACGGGGATGTGAAAAATGAATAA

Domains

Predicted by InterproScan.

Prokaryotic N-terminal methylation motif (N_methyl)

(2-25)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comGC Bacillus subtilis subsp. subtilis str. 168

65.979

100

0.66
  comGC Staphylococcus aureus MW2

40.217

94.845

0.381
  comGC Staphylococcus aureus N315

40.217

94.845

0.381

Multiple sequence alignment