Detailed information
Bioinformatically predicted
Overview
| Name | sinR | Type | Regulator |
| Locus tag | AKO65_RS11945 | Genome accession | NZ_CP012329 |
| Coordinates | 2376243..2376578 (-) | Length | 111 a.a. |
| NCBI ID | WP_017357978.1 | Uniprot ID | - |
| Organism | Bacillus altitudinis strain NJ-M2 | ||
| Function | repression of rok; repression of degU; repression of spo0A (predicted from homology) Competence regulation |
||
Genomic Context
Location: 2371243..2381578
| Locus tag | Gene name | Coordinates (strand) | Size (bp) | Protein ID | Product | Description |
|---|---|---|---|---|---|---|
| AKO65_RS11895 (AKO65_11895) | comGC | 2371454..2371747 (+) | 294 | WP_057079311.1 | competence type IV pilus major pilin ComGC | Machinery gene |
| AKO65_RS11900 (AKO65_11900) | comGD | 2371740..2372186 (+) | 447 | WP_057079312.1 | competence type IV pilus minor pilin ComGD | - |
| AKO65_RS11905 (AKO65_11905) | comGE | 2372170..2372484 (+) | 315 | WP_057079313.1 | competence type IV pilus minor pilin ComGE | - |
| AKO65_RS11910 (AKO65_11910) | comGF | 2372426..2372923 (+) | 498 | WP_057079314.1 | competence type IV pilus minor pilin ComGF | - |
| AKO65_RS11915 (AKO65_11915) | - | 2372920..2373303 (+) | 384 | WP_057079315.1 | competence type IV pilus minor pilin ComGG | - |
| AKO65_RS11920 (AKO65_11920) | - | 2373364..2373552 (+) | 189 | WP_017367591.1 | YqzE family protein | - |
| AKO65_RS11925 (AKO65_11925) | - | 2373587..2373913 (-) | 327 | WP_048001387.1 | DUF3889 domain-containing protein | - |
| AKO65_RS11930 (AKO65_11930) | tapA | 2374166..2374693 (+) | 528 | WP_017367589.1 | amyloid fiber anchoring/assembly protein TapA | - |
| AKO65_RS11935 (AKO65_11935) | sipW | 2374744..2375316 (+) | 573 | WP_017357979.1 | signal peptidase I SipW | - |
| AKO65_RS11940 (AKO65_11940) | tasA | 2375375..2376175 (+) | 801 | WP_008342195.1 | biofilm matrix protein TasA | - |
| AKO65_RS11945 (AKO65_11945) | sinR | 2376243..2376578 (-) | 336 | WP_017357978.1 | transcriptional regulator SinR | Regulator |
| AKO65_RS19555 | - | 2376612..2376776 (-) | 165 | WP_008342197.1 | anti-repressor SinI family protein | - |
| AKO65_RS11950 (AKO65_11950) | - | 2376961..2377758 (-) | 798 | WP_057079316.1 | YqhG family protein | - |
| AKO65_RS11955 (AKO65_11955) | - | 2377773..2379443 (-) | 1671 | WP_017367587.1 | DEAD/DEAH box helicase | - |
| AKO65_RS11960 (AKO65_11960) | gcvT | 2380005..2381102 (+) | 1098 | WP_057079317.1 | glycine cleavage system aminomethyltransferase GcvT | - |
Sequence
Protein
Download Length: 111 a.a. Molecular weight: 12936.47 Da Isoelectric Point: 4.8062
>NTDB_id=153444 AKO65_RS11945 WP_017357978.1 2376243..2376578(-) (sinR) [Bacillus altitudinis strain NJ-M2]
MIGQRIKQYRNEKGYSLSELAEKAGVAKSYLSSIERNLQTNPSIQFLEKVSAVLDVSVHTLLNENDETEYDGQLDSEWEK
LVRDAMTSGVSKKQFREFLDYQIWKKKQEEE
MIGQRIKQYRNEKGYSLSELAEKAGVAKSYLSSIERNLQTNPSIQFLEKVSAVLDVSVHTLLNENDETEYDGQLDSEWEK
LVRDAMTSGVSKKQFREFLDYQIWKKKQEEE
Nucleotide
Download Length: 336 bp
>NTDB_id=153444 AKO65_RS11945 WP_017357978.1 2376243..2376578(-) (sinR) [Bacillus altitudinis strain NJ-M2]
TTGATTGGCCAGCGTATTAAACAATACCGCAATGAAAAAGGCTACTCACTATCAGAACTGGCCGAAAAGGCTGGGGTAGC
GAAGTCTTATTTAAGTTCAATAGAAAGAAACTTGCAAACAAACCCCTCCATTCAATTTCTTGAAAAAGTCTCCGCTGTTC
TGGACGTCTCGGTTCATACACTGTTAAACGAAAATGATGAAACCGAATACGATGGTCAATTAGATAGTGAATGGGAAAAA
CTAGTTCGAGATGCAATGACATCAGGGGTTTCGAAAAAGCAATTTCGTGAATTTTTAGATTATCAAATCTGGAAAAAAAA
GCAAGAAGAGGAGTAA
TTGATTGGCCAGCGTATTAAACAATACCGCAATGAAAAAGGCTACTCACTATCAGAACTGGCCGAAAAGGCTGGGGTAGC
GAAGTCTTATTTAAGTTCAATAGAAAGAAACTTGCAAACAAACCCCTCCATTCAATTTCTTGAAAAAGTCTCCGCTGTTC
TGGACGTCTCGGTTCATACACTGTTAAACGAAAATGATGAAACCGAATACGATGGTCAATTAGATAGTGAATGGGAAAAA
CTAGTTCGAGATGCAATGACATCAGGGGTTTCGAAAAAGCAATTTCGTGAATTTTTAGATTATCAAATCTGGAAAAAAAA
GCAAGAAGAGGAGTAA
3D structure
| Source | ID | Structure |
|---|
Similar proteins
Only experimentally validated proteins are listed.
| Protein | Organism | Identities (%) | Coverage (%) | Ha-value |
|---|---|---|---|---|
| sinR | Bacillus subtilis subsp. subtilis str. 168 |
92.793 |
100 |
0.928 |