Detailed information    

insolico Bioinformatically predicted

Overview

Name   comFA   Type   Machinery gene
Locus tag   AKO65_RS06775 Genome accession   NZ_CP012329
Coordinates   1383929..1385308 (+) Length   459 a.a.
NCBI ID   WP_141116131.1    Uniprot ID   -
Organism   Bacillus altitudinis strain NJ-M2     
Function   ssDNA transport into the cell (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 1378929..1390308
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  AKO65_RS06755 (AKO65_06755) - 1379936..1380604 (-) 669 WP_017357860.1 YigZ family protein -
  AKO65_RS06760 (AKO65_06760) degS 1380826..1382001 (+) 1176 WP_003213166.1 sensor histidine kinase Regulator
  AKO65_RS06765 (AKO65_06765) degU 1382066..1382755 (+) 690 WP_008348273.1 two-component system response regulator DegU Regulator
  AKO65_RS06770 (AKO65_06770) - 1382967..1383809 (+) 843 WP_024719242.1 DegV family protein -
  AKO65_RS06775 (AKO65_06775) comFA 1383929..1385308 (+) 1380 WP_141116131.1 DEAD/DEAH box helicase Machinery gene
  AKO65_RS06780 (AKO65_06780) - 1385373..1385666 (+) 294 WP_035701582.1 late competence development ComFB family protein -
  AKO65_RS06785 (AKO65_06785) comFC 1385768..1386349 (+) 582 WP_234781022.1 ComF family protein Machinery gene
  AKO65_RS06790 (AKO65_06790) - 1386406..1386825 (+) 420 WP_017357864.1 TIGR03826 family flagellar region protein -
  AKO65_RS06795 (AKO65_06795) flgM 1386905..1387168 (+) 264 WP_003213252.1 flagellar biosynthesis anti-sigma factor FlgM -
  AKO65_RS06800 (AKO65_06800) - 1387187..1387669 (+) 483 WP_007499977.1 flagellar protein FlgN -
  AKO65_RS06805 (AKO65_06805) flgK 1387685..1389205 (+) 1521 WP_017368142.1 flagellar hook-associated protein FlgK -
  AKO65_RS06810 (AKO65_06810) flgL 1389214..1390125 (+) 912 WP_017368141.1 flagellar hook-associated protein FlgL -

Sequence

Protein


Download         Length: 459 a.a.        Molecular weight: 52446.18 Da        Isoelectric Point: 9.9106

>NTDB_id=153425 AKO65_RS06775 WP_141116131.1 1383929..1385308(+) (comFA) [Bacillus altitudinis strain NJ-M2]
MNLEKAMELSHKLQSRHLLPIECQCTQSELEWLENQGFIHRTPAVNRVAGGLICCRCGVSNKRYFALSPCETCKKDCVYC
RSCIMLGKVSECGFLYEWTGPQKKETRQVELTWQGELSKGQKRASDRLVEAIQNKFDLLVWAVCGAGKTEVLFHGIKYAL
NNGMSVCIATPRTDVVLELEPRMRKAFQGLNIAALYGGSSQRFQMAPLMIATTHQLMRYKNAFDVLIVDEVDAFPYSMDE
RLQFAVLKSMKKTGVRIYLSATPSKKMQKDVACRQLEAIKIPLRFHQKPLPVPTFQWVGDWKKKLKRNRLPASTMNWLHE
HITKKKRVLLFVPSISTMKKVTHILQVQCVNVQGVSADDQERKQKVQHFRDHRYDVLVTTTILERGVTIQDVQVGVLGAE
SPIFTESALVQISGRAGRHPDFFNGDVYFFHFGLTRSMKQAKKHIVKMNNTAEKEFSEK

Nucleotide


Download         Length: 1380 bp        

>NTDB_id=153425 AKO65_RS06775 WP_141116131.1 1383929..1385308(+) (comFA) [Bacillus altitudinis strain NJ-M2]
TTGAATCTGGAAAAAGCAATGGAACTCAGTCACAAGCTACAATCAAGGCATCTTCTTCCTATTGAATGTCAATGTACACA
GTCCGAATTGGAGTGGCTGGAGAATCAAGGATTCATCCATAGAACACCTGCTGTCAATAGGGTGGCGGGTGGTTTGATCT
GCTGCCGGTGCGGTGTATCAAACAAGCGCTACTTTGCCCTCTCTCCGTGTGAAACATGTAAAAAAGACTGTGTATACTGT
AGATCCTGCATCATGCTGGGAAAAGTAAGTGAATGTGGCTTTCTCTATGAATGGACGGGTCCACAAAAGAAAGAAACAAG
ACAAGTTGAATTAACATGGCAGGGAGAACTTTCTAAAGGGCAAAAGAGAGCGTCCGATAGGCTAGTAGAAGCAATCCAAA
ACAAATTTGATCTGCTCGTTTGGGCTGTTTGTGGTGCGGGGAAAACGGAGGTGCTTTTTCACGGAATAAAATATGCGCTA
AATAACGGAATGAGTGTTTGTATTGCGACGCCTAGAACCGATGTTGTACTTGAGCTTGAACCTCGAATGAGAAAGGCATT
TCAAGGACTGAATATAGCTGCACTTTATGGCGGGAGTTCTCAAAGATTTCAAATGGCACCGCTTATGATCGCTACAACCC
ATCAGCTAATGAGATATAAAAACGCTTTTGATGTCCTCATTGTAGACGAAGTCGATGCTTTTCCTTATTCAATGGATGAA
CGGCTTCAGTTTGCTGTTTTAAAGTCAATGAAAAAAACAGGAGTTAGAATTTACTTAAGTGCCACACCATCTAAAAAAAT
GCAAAAGGATGTTGCTTGTAGACAATTAGAAGCGATCAAAATTCCTCTGCGCTTCCACCAAAAACCGCTGCCTGTCCCAA
CATTTCAATGGGTTGGAGATTGGAAAAAGAAATTAAAAAGAAATCGGCTTCCAGCATCTACAATGAACTGGCTGCATGAA
CATATCACAAAGAAAAAAAGAGTGCTACTCTTTGTTCCTTCTATTTCTACTATGAAGAAGGTAACTCATATTCTTCAAGT
TCAATGTGTAAATGTACAGGGAGTTTCTGCCGATGATCAAGAAAGGAAGCAAAAAGTCCAGCATTTCAGAGATCATAGAT
ACGATGTATTGGTTACAACAACTATTCTAGAAAGAGGCGTTACCATTCAAGATGTTCAAGTGGGCGTATTAGGTGCGGAA
TCTCCTATTTTTACAGAAAGTGCACTTGTCCAAATTTCTGGTAGAGCAGGGAGACATCCAGATTTTTTTAATGGAGACGT
GTACTTTTTTCATTTTGGTTTAACGAGAAGTATGAAACAAGCAAAGAAACATATCGTAAAAATGAATAATACAGCTGAAA
AAGAGTTTTCTGAAAAATAG

Domains

Predicted by InterproScan.

Helicase conserved C-terminal domain (Helicase_C)

(320-419)

Type III restriction enzyme, res subunit (ResIII)

(116-264)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comFA Bacillus subtilis subsp. subtilis str. 168

52.125

97.386

0.508
  comFA/cflA Streptococcus mitis NCTC 12261

38.695

93.464

0.362
  comFA/cflA Streptococcus pneumoniae Rx1

38.515

93.9

0.362
  comFA/cflA Streptococcus pneumoniae D39

38.515

93.9

0.362
  comFA/cflA Streptococcus pneumoniae R6

38.515

93.9

0.362

Multiple sequence alignment