Detailed information    

insolico Bioinformatically predicted

Overview

Name   radC   Type   Machinery gene
Locus tag   V471_RS05460 Genome accession   NZ_CP015283
Coordinates   1061781..1062467 (+) Length   228 a.a.
NCBI ID   WP_045768510.1    Uniprot ID   -
Organism   Streptococcus salivarius strain ATCC 25975     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 1056781..1067467
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  V471_RS05445 (V471_05365) - 1057359..1058285 (+) 927 WP_045768507.1 glycosyltransferase -
  V471_RS05450 (V471_05370) - 1058296..1059723 (+) 1428 WP_225901268.1 DUF2142 domain-containing protein -
  V471_RS05455 (V471_05375) - 1059741..1061735 (+) 1995 WP_232326842.1 hypothetical protein -
  V471_RS05460 (V471_05380) radC 1061781..1062467 (+) 687 WP_045768510.1 RadC family protein Machinery gene
  V471_RS05465 (V471_05385) - 1062525..1063220 (-) 696 WP_013990214.1 gamma-glutamyl-gamma-aminobutyrate hydrolase family protein -
  V471_RS05470 (V471_05390) - 1063213..1063872 (-) 660 WP_045768511.1 redox-sensing transcriptional repressor Rex -
  V471_RS05475 (V471_05395) - 1064015..1064362 (-) 348 WP_002884733.1 DUF1831 domain-containing protein -
  V471_RS05480 (V471_05400) - 1064352..1065476 (-) 1125 WP_045772223.1 cysteine desulfurase family protein -
  V471_RS05485 (V471_05405) - 1065480..1066451 (-) 972 WP_013990217.1 ribose-phosphate diphosphokinase -
  V471_RS05490 (V471_05410) - 1066725..1067300 (-) 576 WP_037604672.1 CYTH domain-containing protein -

Sequence

Protein


Download         Length: 228 a.a.        Molecular weight: 25776.88 Da        Isoelectric Point: 7.4015

>NTDB_id=153167 V471_RS05460 WP_045768510.1 1061781..1062467(+) (radC) [Streptococcus salivarius strain ATCC 25975]
MYSIVSEEAGLLPRERLLQKGAEVLSDQELLAIVLRTGTKSESVLSMANRILKGMTSLADLSRLSLNELQKIPGIGRVKS
IELKAMVELAKRIEKAELARSEQIMSSQQVARRMMLDIGDKPQEHLVAIYLDTQNRVIQQKTVFIGGVRRSIAEPREILH
YACHLMATSLIVVHNHPSGEAYPSRNDIDFTQKIKRSCDDLGICLLDHLIVGKSTYYSFREEREDFEL

Nucleotide


Download         Length: 687 bp        

>NTDB_id=153167 V471_RS05460 WP_045768510.1 1061781..1062467(+) (radC) [Streptococcus salivarius strain ATCC 25975]
ATGTATAGTATTGTATCTGAGGAGGCGGGGCTTTTGCCTCGTGAGCGACTCTTACAGAAGGGAGCAGAGGTTTTATCGGA
CCAGGAGCTGTTGGCGATAGTGCTGCGGACAGGGACCAAGTCTGAGTCGGTCTTATCTATGGCTAATCGTATTTTGAAAG
GGATGACGAGTTTGGCGGATTTGTCTCGTTTGTCTTTGAATGAGCTTCAGAAGATTCCTGGTATTGGGCGTGTGAAGTCT
ATTGAGCTGAAGGCTATGGTGGAGTTGGCTAAGCGGATTGAGAAGGCCGAGTTGGCTCGTTCCGAGCAGATTATGTCCAG
TCAGCAAGTAGCCCGTCGTATGATGTTGGATATTGGGGACAAGCCTCAGGAGCATCTGGTGGCTATCTACTTGGATACGC
AGAATCGTGTTATTCAGCAGAAGACGGTCTTTATTGGTGGTGTTCGTCGTTCGATTGCTGAGCCACGTGAGATTTTGCAT
TATGCTTGTCATCTGATGGCAACGTCCCTGATTGTGGTTCACAATCATCCATCGGGTGAGGCCTATCCGAGTCGAAATGA
TATTGATTTTACGCAAAAGATTAAGCGGTCTTGCGATGATTTGGGGATTTGTCTGCTTGATCATCTGATTGTTGGCAAAT
CGACCTATTATTCTTTTCGTGAGGAGAGGGAGGATTTTGAGCTTTAG

Domains

Predicted by InterProScan.

UPF0758 N-terminal (UPF0758_N)

(13-80)

RadC-like JAB domain (RadC)

(105-222)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  radC Streptococcus pneumoniae TIGR4

58.482

98.246

0.575
  radC Streptococcus pneumoniae R6

58.036

98.246

0.57
  radC Streptococcus pneumoniae D39

58.036

98.246

0.57
  radC Streptococcus gordonii str. Challis substr. CH1

57.658

97.368

0.561
  ysxA/radC Bacillus subtilis subsp. subtilis str. 168

48.585

92.982

0.452