Detailed information    

insolico Bioinformatically predicted

Overview

Name   coiA   Type   Machinery gene
Locus tag   V471_RS05055 Genome accession   NZ_CP015283
Coordinates   972443..973402 (+) Length   319 a.a.
NCBI ID   WP_084871168.1    Uniprot ID   -
Organism   Streptococcus salivarius strain ATCC 25975     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 967443..978402
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  V471_RS05030 (V471_04965) - 967823..968662 (+) 840 WP_084871167.1 CHAP domain-containing protein -
  V471_RS10930 (V471_04970) - 969100..969943 (-) 844 Protein_924 IS3 family transposase -
  V471_RS05050 (V471_04980) - 970259..971278 (-) 1020 WP_171021848.1 IS30-like element IS1139 family transposase -
  V471_RS05055 (V471_04985) coiA 972443..973402 (+) 960 WP_084871168.1 competence protein CoiA Machinery gene
  V471_RS05060 (V471_04990) pepF 973413..975218 (+) 1806 WP_084871169.1 oligoendopeptidase F Regulator
  V471_RS05065 (V471_04995) - 975430..976650 (+) 1221 WP_045769259.1 OFA family MFS transporter -
  V471_RS05070 (V471_05000) - 976722..977429 (+) 708 WP_014633986.1 O-methyltransferase -

Sequence

Protein


Download         Length: 319 a.a.        Molecular weight: 37844.49 Da        Isoelectric Point: 9.0170

>NTDB_id=153162 V471_RS05055 WP_084871168.1 972443..973402(+) (coiA) [Streptococcus salivarius strain ATCC 25975]
MLIAKNQEGNLVSALETSLQRKESYSCPGCQGVVLLRHGQVMCPHFAHKSLQDCQFFSENESAQHLSLKAALYKSLVNHG
EKVSIEKVLSEMGQIADLFVGDSLALEVQCSRLSQQRLRERTCAYHQAGYEVRWLLGEELWLNGRLTDLQRDFLYFTAKI
GFHLWELDWKREEIRLKYLIYEDIFGKVYYLTKAWPLTENLMTVLRFPYQAEQVETYQVTQRKRVSHVIQRELMGKNPRW
MRRQEEAYLNGMNLLCLSDQDFSPQVRFPESKQGFVQIRQSLEGFEKLFMQYYRKRHFSYRQTLYPPTFYAKIVKNRYN

Nucleotide


Download         Length: 960 bp        

>NTDB_id=153162 V471_RS05055 WP_084871168.1 972443..973402(+) (coiA) [Streptococcus salivarius strain ATCC 25975]
ATGTTAATTGCAAAAAATCAGGAGGGAAACCTCGTTTCAGCTCTAGAAACCAGTTTGCAACGTAAGGAATCCTATAGCTG
TCCTGGTTGCCAGGGAGTTGTCCTTCTGAGACATGGCCAGGTAATGTGTCCACATTTTGCTCATAAGTCTTTGCAAGATT
GTCAGTTCTTCTCGGAGAATGAATCGGCCCAACATTTATCTCTTAAGGCAGCTTTGTATAAATCTTTGGTTAATCATGGT
GAAAAAGTAAGTATTGAAAAAGTTTTGTCTGAGATGGGGCAAATTGCAGATTTATTTGTTGGCGATTCCCTGGCTCTAGA
AGTTCAGTGTTCTCGGTTATCCCAGCAACGTTTGAGAGAGAGGACATGTGCCTATCACCAAGCAGGTTACGAAGTGCGTT
GGCTTTTGGGTGAGGAACTCTGGTTGAATGGTCGTCTAACAGACCTACAGCGGGACTTTCTCTATTTTACGGCTAAGATT
GGATTTCACCTATGGGAGCTTGATTGGAAGCGTGAGGAAATTAGACTTAAGTATCTCATCTATGAGGATATTTTTGGGAA
AGTCTATTATTTAACTAAGGCTTGGCCGTTAACCGAAAATCTCATGACAGTTCTACGTTTTCCTTATCAAGCAGAGCAGG
TTGAGACTTATCAAGTAACTCAGCGAAAGAGGGTCTCACATGTGATTCAACGAGAATTAATGGGGAAAAATCCAAGGTGG
ATGAGAAGGCAGGAAGAAGCCTATCTTAATGGAATGAATTTATTATGCCTGTCTGATCAGGATTTTTCCCCACAAGTAAG
ATTTCCTGAATCTAAGCAGGGCTTTGTACAAATTAGACAGTCACTTGAAGGTTTTGAAAAGCTTTTTATGCAATATTATC
GAAAAAGGCATTTTTCTTATCGACAAACTCTCTACCCTCCCACCTTTTATGCTAAAATAGTAAAGAATAGATACAATTAA

Domains

Predicted by InterProScan.

Competence protein CoiA-like family (CoiA_nuc)

(1-270)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  coiA Streptococcus pneumoniae TIGR4

45.016

97.492

0.439
  coiA Streptococcus pneumoniae Rx1

45.016

97.492

0.439
  coiA Streptococcus pneumoniae D39

45.016

97.492

0.439
  coiA Streptococcus pneumoniae R6

45.016

97.492

0.439
  coiA Streptococcus mitis NCTC 12261

45.016

97.492

0.439
  coiA Lactococcus lactis subsp. cremoris KW2

36.061

100

0.373

Multiple sequence alignment