Detailed information    

insolico Bioinformatically predicted

Overview

Name   ruvA   Type   Machinery gene
Locus tag   V471_RS03140 Genome accession   NZ_CP015283
Coordinates   600989..601579 (+) Length   196 a.a.
NCBI ID   WP_004181981.1    Uniprot ID   -
Organism   Streptococcus salivarius strain ATCC 25975     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 595989..606579
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  V471_RS03115 (V471_03085) - 597113..597568 (-) 456 WP_084871097.1 DUF3021 domain-containing protein -
  V471_RS03120 (V471_03090) brsR 597565..598002 (-) 438 WP_014633775.1 LytTR family DNA-binding domain-containing protein Regulator
  V471_RS03125 (V471_03095) - 598181..598486 (+) 306 WP_002886319.1 hypothetical protein -
  V471_RS03130 (V471_03100) hexB 598536..600479 (+) 1944 WP_084869677.1 DNA mismatch repair endonuclease MutL Machinery gene
  V471_RS03135 (V471_03105) - 600610..600831 (+) 222 WP_002886321.1 hypothetical protein -
  V471_RS03140 (V471_03110) ruvA 600989..601579 (+) 591 WP_004181981.1 Holliday junction branch migration protein RuvA Machinery gene
  V471_RS03145 (V471_03115) - 601588..602142 (+) 555 WP_084871098.1 DNA-3-methyladenine glycosylase I -
  V471_RS03150 (V471_03120) cinA 602239..603510 (+) 1272 WP_084871099.1 competence/damage-inducible protein A Machinery gene
  V471_RS03155 (V471_03125) recA 603546..604685 (+) 1140 WP_014633715.1 recombinase RecA Machinery gene
  V471_RS03160 (V471_03130) - 604816..605802 (+) 987 WP_084871100.1 IS30 family transposase -
  V471_RS03165 (V471_03135) spx 605940..606338 (+) 399 WP_002886328.1 transcriptional regulator Spx -

Sequence

Protein


Download         Length: 196 a.a.        Molecular weight: 21698.10 Da        Isoelectric Point: 5.6710

>NTDB_id=153136 V471_RS03140 WP_004181981.1 600989..601579(+) (ruvA) [Streptococcus salivarius strain ATCC 25975]
MYDYIKGTLVKITAKYIVIEANGLGYIVTVANPYSFSDQMNQTIQVYLHQVIRDDAHLLFGFHTEDEKEVFLKLISVSGI
GPTTALAIVAVDDNQGLVAAVDNSDIKYLMKFPKIGKKTAQQMVLDLAGKFAELPTETTKTTPSQPEGNHQLDEAMEALL
ALGYKAAELKKIKAFFEGTNETAEQYIKSALKMLMK

Nucleotide


Download         Length: 591 bp        

>NTDB_id=153136 V471_RS03140 WP_004181981.1 600989..601579(+) (ruvA) [Streptococcus salivarius strain ATCC 25975]
ATGTATGATTACATCAAGGGAACTCTAGTGAAAATTACCGCCAAGTATATTGTTATAGAAGCAAACGGCTTAGGTTATAT
TGTCACTGTAGCGAATCCATATAGTTTTTCTGACCAAATGAATCAGACTATCCAAGTCTATCTTCATCAGGTTATTAGAG
ATGATGCCCACCTTCTTTTTGGTTTTCATACTGAAGATGAAAAAGAGGTCTTCCTTAAGCTTATTTCAGTTTCTGGAATA
GGTCCGACGACTGCCCTAGCCATTGTTGCTGTAGATGATAATCAAGGCTTGGTTGCTGCTGTTGATAATAGTGACATCAA
GTACTTGATGAAGTTTCCAAAGATTGGTAAAAAGACAGCTCAACAAATGGTTCTGGATTTGGCAGGGAAATTTGCAGAGT
TACCAACAGAAACAACCAAGACGACACCAAGTCAACCTGAAGGGAATCATCAATTGGATGAGGCTATGGAAGCCTTGCTT
GCTCTTGGTTATAAAGCCGCAGAACTTAAGAAAATCAAAGCCTTCTTCGAAGGTACTAATGAAACGGCAGAGCAATACAT
TAAATCAGCTCTTAAGATGTTGATGAAATGA

Domains

Predicted by InterProScan.

RuvA, C-terminal domain (RuvA_C)

(152-195)

Helix-hairpin-helix domain (HHH_5)

(71-127)

RuvA N terminal domain (RuvA_N)

(1-61)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  ruvA Streptococcus pneumoniae TIGR4

65

100

0.663
  ruvA Streptococcus pneumoniae R6

65

100

0.663
  ruvA Streptococcus pneumoniae D39

65

100

0.663
  ruvA Bacillus subtilis subsp. subtilis str. 168

40.887

100

0.423