Detailed information    

insolico Bioinformatically predicted

Overview

Name   ruvB   Type   Machinery gene
Locus tag   V471_RS02290 Genome accession   NZ_CP015283
Coordinates   451725..452726 (-) Length   333 a.a.
NCBI ID   WP_002887068.1    Uniprot ID   -
Organism   Streptococcus salivarius strain ATCC 25975     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 446725..457726
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  V471_RS02245 (V471_02240) rplP 446823..447236 (-) 414 WP_000960950.1 50S ribosomal protein L16 -
  V471_RS02250 (V471_02245) rpsC 447240..447893 (-) 654 WP_002885727.1 30S ribosomal protein S3 -
  V471_RS02255 (V471_02250) rplV 447906..448250 (-) 345 WP_002887063.1 50S ribosomal protein L22 -
  V471_RS02260 (V471_02255) rpsS 448266..448544 (-) 279 WP_000533765.1 30S ribosomal protein S19 -
  V471_RS02265 (V471_02260) rplB 448638..449471 (-) 834 WP_002887065.1 50S ribosomal protein L2 -
  V471_RS02270 (V471_02265) - 449489..449785 (-) 297 WP_002887066.1 50S ribosomal protein L23 -
  V471_RS02275 (V471_02270) rplD 449785..450408 (-) 624 WP_002885795.1 50S ribosomal protein L4 -
  V471_RS02280 (V471_02275) rplC 450433..451059 (-) 627 WP_002885755.1 50S ribosomal protein L3 -
  V471_RS02285 (V471_02280) rpsJ 451174..451482 (-) 309 WP_002885653.1 30S ribosomal protein S10 -
  V471_RS02290 (V471_02285) ruvB 451725..452726 (-) 1002 WP_002887068.1 Holliday junction branch migration DNA helicase RuvB Machinery gene
  V471_RS02295 (V471_02290) - 452861..453847 (+) 987 WP_084871067.1 IS30 family transposase -
  V471_RS02300 (V471_02295) - 453894..455717 (-) 1824 WP_084871068.1 acyltransferase family protein -
  V471_RS02305 (V471_02300) - 455714..456124 (-) 411 WP_002885750.1 membrane protein -
  V471_RS02310 (V471_02305) - 456121..456555 (-) 435 WP_045769362.1 low molecular weight protein-tyrosine-phosphatase -

Sequence

Protein


Download         Length: 333 a.a.        Molecular weight: 37583.09 Da        Isoelectric Point: 4.5040

>NTDB_id=153127 V471_RS02290 WP_002887068.1 451725..452726(-) (ruvB) [Streptococcus salivarius strain ATCC 25975]
MARILDNDLLGDEEYVERTLRPQYFKEYIGQDKVKDQLKIFIEAAKLRDEALDHTLLFGPPGLGKTTMAFVIANEMGVNL
KQTSGPAIEKAGDLVAILNDLEPGDILFIDEIHRMPMAVEEVLYSAMEDYYIDIMIGAGETSRSVHLELPPFTLVGATTR
AGMLSNPLRARFGINGHMEYYELPDLKEIIERTSEIFDMTITPEAALELARRSRGTPRIANRLLKRVRDYAQIMGDGIID
DKIADKALTMLDVDHEGLDYVDQKILRTMIEMYGGGPVGLGTLSVNIAEERETVEDMYEPYLIQKGFIMRTRTGRVATVK
AYEHMGYDYTQES

Nucleotide


Download         Length: 1002 bp        

>NTDB_id=153127 V471_RS02290 WP_002887068.1 451725..452726(-) (ruvB) [Streptococcus salivarius strain ATCC 25975]
ATGGCAAGAATATTAGATAATGATTTACTAGGAGATGAAGAGTATGTTGAGCGTACCCTTCGTCCTCAGTACTTTAAGGA
ATATATTGGTCAAGATAAGGTTAAAGACCAATTAAAGATTTTTATAGAGGCAGCTAAACTTCGTGATGAAGCCCTAGATC
ATACTCTTTTGTTTGGTCCTCCAGGTTTGGGGAAAACAACTATGGCTTTTGTGATAGCTAATGAGATGGGCGTCAATTTA
AAGCAGACGTCTGGGCCAGCAATTGAAAAGGCTGGTGATTTAGTTGCCATACTCAATGACTTGGAGCCGGGTGATATCTT
ATTTATTGATGAGATTCACCGGATGCCTATGGCAGTTGAAGAAGTTCTTTATAGTGCTATGGAAGATTACTACATCGATA
TCATGATTGGTGCGGGCGAAACAAGTCGTAGTGTCCACCTAGAGTTACCACCGTTCACATTAGTAGGTGCAACTACACGA
GCAGGTATGTTGTCAAATCCATTGAGGGCTCGTTTTGGAATTAATGGTCATATGGAATATTATGAGTTACCAGATTTGAA
GGAAATCATAGAACGTACTTCAGAAATCTTTGACATGACTATAACACCTGAAGCTGCTCTAGAGCTAGCACGTCGTAGCC
GTGGGACGCCTCGTATTGCTAACCGCCTACTTAAGCGCGTGAGAGACTATGCACAAATCATGGGTGATGGCATCATTGAT
GATAAGATTGCAGACAAGGCGTTGACTATGTTGGATGTGGACCATGAAGGACTAGATTATGTCGATCAAAAAATTCTCCG
CACCATGATTGAAATGTATGGTGGGGGACCAGTTGGTCTAGGTACCTTGTCAGTTAATATTGCTGAAGAGCGAGAAACGG
TAGAAGATATGTATGAACCCTATCTAATTCAAAAGGGATTTATTATGCGAACACGAACAGGTCGTGTTGCAACGGTTAAA
GCCTATGAACACATGGGGTACGACTACACTCAAGAAAGTTGA

Domains

Predicted by InterProScan.

RuvB AAA lid domain (AAA_lid_4)

(181-254)

Holliday junction DNA helicase RuvB P-loop domain (RuvB_N)

(20-178)

RuvB C-terminal winged helix domain (WHD_RuvB)

(256-325)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  ruvB Streptococcus pneumoniae TIGR4

86.747

99.7

0.865
  ruvB Streptococcus pneumoniae R6

86.446

99.7

0.862
  ruvB Streptococcus pneumoniae D39

86.446

99.7

0.862
  ruvB Bacillus subtilis subsp. subtilis str. 168

58.204

96.997

0.565
  ruvB Synechocystis sp. PCC 6803

51.118

93.994

0.48
  ruvB Helicobacter pylori 26695

49.844

96.396

0.48