Detailed information
Bioinformatically predicted
Overview
| Name | ssb | Type | Machinery gene |
| Locus tag | AFK62_RS17760 | Genome accession | NZ_CP012264 |
| Coordinates | 3872248..3872790 (-) | Length | 180 a.a. |
| NCBI ID | WP_007675594.1 | Uniprot ID | K8ABX4 |
| Organism | Cronobacter condimenti 1330 strain LMG 26250 | ||
| Function | ssDNA binding (predicted from homology) DNA processing |
||
Genomic Context
Location: 3867248..3877790
| Locus tag | Gene name | Coordinates (strand) | Size (bp) | Protein ID | Product | Description |
|---|---|---|---|---|---|---|
| AFK62_RS17735 (AFK62_17770) | soxS | 3867435..3867758 (+) | 324 | WP_007675612.1 | superoxide response transcriptional regulator SoxS | - |
| AFK62_RS17740 (AFK62_17775) | - | 3867746..3869353 (-) | 1608 | WP_144420972.1 | EAL domain-containing protein | - |
| AFK62_RS17745 (AFK62_17780) | - | 3869930..3870208 (+) | 279 | WP_007675600.1 | YjcB family protein | - |
| AFK62_RS17750 (AFK62_17785) | - | 3870271..3870615 (-) | 345 | WP_032984558.1 | hypothetical protein | - |
| AFK62_RS17755 (AFK62_17790) | - | 3870791..3871837 (-) | 1047 | WP_007675596.1 | diguanylate cyclase | - |
| AFK62_RS17760 (AFK62_17795) | ssb | 3872248..3872790 (-) | 543 | WP_007675594.1 | single-stranded DNA-binding protein SSB1 | Machinery gene |
| AFK62_RS17765 (AFK62_17800) | uvrA | 3873021..3875846 (+) | 2826 | WP_053532062.1 | excinuclease ABC subunit UvrA | - |
| AFK62_RS17770 (AFK62_17805) | - | 3876056..3876457 (+) | 402 | WP_007675592.1 | hypothetical protein | - |
| AFK62_RS17775 (AFK62_17810) | - | 3876469..3876813 (+) | 345 | WP_007675589.1 | hypothetical protein | - |
Sequence
Protein
Download Length: 180 a.a. Molecular weight: 19321.36 Da Isoelectric Point: 5.2358
>NTDB_id=153094 AFK62_RS17760 WP_007675594.1 3872248..3872790(-) (ssb) [Cronobacter condimenti 1330 strain LMG 26250]
MASRGVNKVILVGNLGQDPEVRYMPNGGAVANLRLATSESWRDKQTGEMKEVTEWHSVVLYGKLAEVAGEYLRKGSQIYI
EGQLRTRKWQDQSGQDRYSTEVVVNVGGTMQMLGGRQGGGAPAGGNMGGGQQQGGWGQPQQPQQQSGGAQFSGGAQSRPQ
QQAPAPSNEPPMDFDDDIPF
MASRGVNKVILVGNLGQDPEVRYMPNGGAVANLRLATSESWRDKQTGEMKEVTEWHSVVLYGKLAEVAGEYLRKGSQIYI
EGQLRTRKWQDQSGQDRYSTEVVVNVGGTMQMLGGRQGGGAPAGGNMGGGQQQGGWGQPQQPQQQSGGAQFSGGAQSRPQ
QQAPAPSNEPPMDFDDDIPF
Nucleotide
Download Length: 543 bp
>NTDB_id=153094 AFK62_RS17760 WP_007675594.1 3872248..3872790(-) (ssb) [Cronobacter condimenti 1330 strain LMG 26250]
ATGGCCAGCAGAGGCGTAAACAAGGTGATTCTCGTCGGTAATCTGGGGCAGGACCCGGAAGTACGCTACATGCCGAATGG
CGGGGCCGTTGCGAACCTGCGCCTGGCGACGTCCGAATCCTGGCGCGACAAGCAGACCGGCGAGATGAAAGAAGTGACCG
AATGGCACAGCGTTGTGCTGTACGGCAAGCTGGCGGAAGTCGCGGGTGAATATCTGCGTAAAGGTTCGCAGATCTACATC
GAAGGTCAGTTGCGTACCCGTAAATGGCAGGATCAGAGCGGTCAGGATCGCTATTCGACCGAAGTTGTCGTTAATGTCGG
CGGTACCATGCAGATGCTGGGTGGCCGTCAGGGCGGCGGCGCACCGGCCGGTGGCAACATGGGCGGCGGTCAGCAGCAGG
GCGGTTGGGGTCAGCCTCAGCAACCTCAGCAGCAGAGTGGCGGCGCGCAGTTCAGCGGCGGCGCACAATCCCGTCCGCAG
CAGCAGGCGCCGGCACCGTCTAACGAACCGCCGATGGATTTCGACGACGATATCCCGTTCTGA
ATGGCCAGCAGAGGCGTAAACAAGGTGATTCTCGTCGGTAATCTGGGGCAGGACCCGGAAGTACGCTACATGCCGAATGG
CGGGGCCGTTGCGAACCTGCGCCTGGCGACGTCCGAATCCTGGCGCGACAAGCAGACCGGCGAGATGAAAGAAGTGACCG
AATGGCACAGCGTTGTGCTGTACGGCAAGCTGGCGGAAGTCGCGGGTGAATATCTGCGTAAAGGTTCGCAGATCTACATC
GAAGGTCAGTTGCGTACCCGTAAATGGCAGGATCAGAGCGGTCAGGATCGCTATTCGACCGAAGTTGTCGTTAATGTCGG
CGGTACCATGCAGATGCTGGGTGGCCGTCAGGGCGGCGGCGCACCGGCCGGTGGCAACATGGGCGGCGGTCAGCAGCAGG
GCGGTTGGGGTCAGCCTCAGCAACCTCAGCAGCAGAGTGGCGGCGCGCAGTTCAGCGGCGGCGCACAATCCCGTCCGCAG
CAGCAGGCGCCGGCACCGTCTAACGAACCGCCGATGGATTTCGACGACGATATCCCGTTCTGA
Similar proteins
Only experimentally validated proteins are listed.
| Protein | Organism | Identities (%) | Coverage (%) | Ha-value |
|---|---|---|---|---|
| ssb | Vibrio cholerae strain A1552 |
74.725 |
100 |
0.756 |
| ssb | Glaesserella parasuis strain SC1401 |
57.219 |
100 |
0.594 |
| ssb | Neisseria meningitidis MC58 |
48.087 |
100 |
0.489 |
| ssb | Neisseria gonorrhoeae MS11 |
48.087 |
100 |
0.489 |