Detailed information    

insolico Bioinformatically predicted

Overview

Name   radC   Type   Machinery gene
Locus tag   NX99_RS09585 Genome accession   NZ_CP015282
Coordinates   2046986..2047672 (+) Length   228 a.a.
NCBI ID   WP_014727630.1    Uniprot ID   -
Organism   Streptococcus salivarius strain ATCC 27945     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 2041986..2052672
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  NX99_RS09565 (NX99_09410) - 2042349..2043287 (+) 939 WP_084915436.1 glycosyltransferase family 2 protein -
  NX99_RS09570 (NX99_09415) - 2043288..2044094 (+) 807 WP_049554133.1 ABC transporter permease -
  NX99_RS09575 (NX99_09420) - 2044094..2045296 (+) 1203 WP_022496742.1 ABC transporter ATP-binding protein -
  NX99_RS09580 (NX99_09425) - 2045297..2046940 (+) 1644 WP_084915438.1 rhamnan synthesis F family protein -
  NX99_RS09585 (NX99_09430) radC 2046986..2047672 (+) 687 WP_014727630.1 RadC family protein Machinery gene
  NX99_RS09590 (NX99_09435) - 2047729..2048424 (-) 696 WP_022496740.1 gamma-glutamyl-gamma-aminobutyrate hydrolase family protein -
  NX99_RS09595 (NX99_09440) - 2048417..2049076 (-) 660 WP_037611833.1 redox-sensing transcriptional repressor Rex -
  NX99_RS09600 (NX99_09445) - 2049218..2049565 (-) 348 WP_084915440.1 DUF1831 domain-containing protein -
  NX99_RS09605 (NX99_09450) - 2049567..2050679 (-) 1113 WP_084915442.1 cysteine desulfurase family protein -
  NX99_RS09610 (NX99_09455) - 2050683..2051654 (-) 972 WP_002886837.1 ribose-phosphate diphosphokinase -
  NX99_RS09615 (NX99_09460) - 2051927..2052502 (-) 576 WP_022496737.1 CYTH domain-containing protein -

Sequence

Protein


Download         Length: 228 a.a.        Molecular weight: 25819.86 Da        Isoelectric Point: 6.7542

>NTDB_id=153084 NX99_RS09585 WP_014727630.1 2046986..2047672(+) (radC) [Streptococcus salivarius strain ATCC 27945]
MYSIVAEESGLLPRERLLQKGAEVLSDQELLAIVLRTGTRSESVLSMANRILKGMTSLADLSRLSLNELQEIPGIGRVKS
IELKAMVELAKRIEKAELARSEQIMSSQQVARRMMLDIGDKPQEHLVAIYLDTQNRIIQQKTVFIGGVRRSIAEPREILH
YACHLMATSLIVVHNHPSGEAYPSRNDIDFTQKIKRSCDDLGICLLDHLIVGKSTYYSFREEREDFEL

Nucleotide


Download         Length: 687 bp        

>NTDB_id=153084 NX99_RS09585 WP_014727630.1 2046986..2047672(+) (radC) [Streptococcus salivarius strain ATCC 27945]
ATGTATAGTATTGTAGCTGAGGAGTCGGGGCTTTTGCCTCGTGAGCGACTCTTACAGAAGGGAGCAGAGGTTTTGTCGGA
CCAGGAGTTGTTGGCGATAGTGCTGCGGACAGGGACTAGGTCTGAGTCGGTCCTATCTATGGCCAATCGTATTTTGAAAG
GGATGACGAGTTTGGCGGATTTGTCTCGTTTGTCCTTGAATGAGCTTCAGGAGATTCCTGGTATTGGGCGTGTGAAGTCT
ATTGAGCTCAAGGCTATGGTGGAGTTGGCTAAGCGGATTGAGAAGGCTGAGTTGGCTCGGTCTGAGCAGATTATGTCTAG
CCAGCAGGTGGCGCGTCGTATGATGTTGGATATTGGCGACAAGCCTCAGGAGCATCTGGTGGCTATCTATTTGGATACGC
AGAACCGTATTATTCAGCAAAAGACGGTCTTTATTGGTGGGGTCCGTCGTTCGATTGCTGAGCCACGTGAGATTTTACAT
TATGCCTGTCATCTGATGGCAACGTCTTTGATTGTGGTTCACAATCATCCTTCGGGGGAAGCCTATCCTAGTCGTAATGA
TATTGATTTTACTCAAAAGATTAAGCGGTCCTGTGATGACTTAGGGATTTGTCTGCTTGATCATCTGATTGTTGGAAAAT
CAACCTATTATTCCTTTCGTGAGGAGAGGGAGGATTTTGAGCTTTAG

Domains

Predicted by InterProScan.

UPF0758 N-terminal (UPF0758_N)

(13-80)

RadC-like JAB domain (RadC)

(105-222)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  radC Streptococcus pneumoniae TIGR4

59.375

98.246

0.583
  radC Streptococcus pneumoniae R6

58.929

98.246

0.579
  radC Streptococcus pneumoniae D39

58.929

98.246

0.579
  radC Streptococcus gordonii str. Challis substr. CH1

57.658

97.368

0.561
  ysxA/radC Bacillus subtilis subsp. subtilis str. 168

47.642

92.982

0.443