Detailed information    

insolico Bioinformatically predicted

Overview

Name   ssb   Type   Machinery gene
Locus tag   AFK65_RS17480 Genome accession   NZ_CP012257
Coordinates   3796067..3796609 (-) Length   180 a.a.
NCBI ID   WP_007702264.1    Uniprot ID   -
Organism   Cronobacter universalis NCTC 9529     
Function   ssDNA binding (predicted from homology)   
DNA processing

Genomic Context

Location: 3791067..3801609
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  AFK65_RS17455 (AFK65_17500) soxS 3791301..3791624 (+) 324 WP_004386206.1 superoxide response transcriptional regulator SoxS -
  AFK65_RS17460 (AFK65_17505) - 3791612..3793219 (-) 1608 WP_144421408.1 EAL domain-containing protein -
  AFK65_RS17465 (AFK65_17510) - 3793806..3794084 (+) 279 WP_004386205.1 YjcB family protein -
  AFK65_RS17470 (AFK65_17515) - 3794147..3794491 (-) 345 WP_032805698.1 hypothetical protein -
  AFK65_RS17475 (AFK65_17520) - 3794667..3795713 (-) 1047 WP_007702261.1 GGDEF domain-containing protein -
  AFK65_RS17480 (AFK65_17525) ssb 3796067..3796609 (-) 543 WP_007702264.1 single-stranded DNA-binding protein SSB1 Machinery gene
  AFK65_RS17485 (AFK65_17530) uvrA 3796840..3799665 (+) 2826 WP_038856175.1 excinuclease ABC subunit UvrA -
  AFK65_RS17490 (AFK65_17535) - 3799756..3800268 (+) 513 WP_007702268.1 hypothetical protein -
  AFK65_RS17495 (AFK65_17540) - 3800281..3800625 (+) 345 WP_007702271.1 hypothetical protein -

Sequence

Protein


Download         Length: 180 a.a.        Molecular weight: 19291.33 Da        Isoelectric Point: 5.2358

>NTDB_id=153072 AFK65_RS17480 WP_007702264.1 3796067..3796609(-) (ssb) [Cronobacter universalis NCTC 9529]
MASRGVNKVILVGNLGQDPEVRYMPNGGAVANLRLATSESWRDKQTGEMKEVTEWHSVVLYGKLAEVAGEYLRKGSQIYI
EGQLRTRKWQDQSGQDRYSTEVVVNVGGTMQMLGGRQGGGAPAGGNMGGGQQQGGWGQPQQPQQQGGGAQFSGGAQSRPQ
QQAPAPSNEPPMDFDDDIPF

Nucleotide


Download         Length: 543 bp        

>NTDB_id=153072 AFK65_RS17480 WP_007702264.1 3796067..3796609(-) (ssb) [Cronobacter universalis NCTC 9529]
ATGGCCAGCAGAGGCGTAAACAAGGTGATTCTCGTCGGTAATCTGGGGCAGGACCCGGAAGTACGCTACATGCCGAACGG
CGGGGCCGTGGCGAACCTGCGCCTGGCGACTTCCGAATCCTGGCGCGATAAGCAGACCGGTGAGATGAAAGAAGTGACCG
AATGGCACAGCGTCGTGCTGTACGGGAAACTGGCGGAAGTGGCGGGCGAATACCTGCGCAAAGGCTCGCAGATCTACATC
GAAGGTCAGCTGCGCACGCGTAAATGGCAGGATCAGAGCGGTCAGGATCGCTACTCTACCGAAGTCGTGGTGAACGTCGG
CGGCACCATGCAGATGCTGGGCGGCCGTCAGGGCGGCGGCGCACCGGCAGGCGGCAACATGGGCGGCGGCCAGCAGCAGG
GCGGCTGGGGTCAGCCTCAGCAGCCGCAGCAGCAGGGTGGCGGCGCGCAGTTCAGCGGCGGCGCACAGTCCCGTCCGCAG
CAGCAGGCGCCAGCGCCTTCTAACGAACCGCCGATGGATTTCGACGACGATATCCCGTTCTGA

Domains

Predicted by InterproScan.

Single-strand binding protein family (SSB)

(6-112)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  ssb Vibrio cholerae strain A1552

74.725

100

0.756
  ssb Glaesserella parasuis strain SC1401

57.219

100

0.594
  ssb Neisseria gonorrhoeae MS11

47.283

100

0.483
  ssb Neisseria meningitidis MC58

45.109

100

0.461

Multiple sequence alignment