Detailed information    

insolico Bioinformatically predicted

Overview

Name   rexA   Type   Machinery gene
Locus tag   NX99_RS08420 Genome accession   NZ_CP015282
Coordinates   1810191..1813844 (+) Length   1217 a.a.
NCBI ID   WP_084915322.1    Uniprot ID   -
Organism   Streptococcus salivarius strain ATCC 27945     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 1805191..1818844
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  NX99_RS08410 (NX99_08265) - 1805259..1806632 (+) 1374 WP_022495868.1 GHKL domain-containing protein -
  NX99_RS08415 (NX99_08270) rexB 1806881..1810201 (+) 3321 WP_084915320.1 ATP-dependent nuclease subunit B Machinery gene
  NX99_RS08420 (NX99_08275) rexA 1810191..1813844 (+) 3654 WP_084915322.1 helicase-exonuclease AddAB subunit AddA Machinery gene
  NX99_RS08425 (NX99_08280) - 1814196..1814927 (-) 732 WP_070850150.1 DUF554 domain-containing protein -
  NX99_RS08430 (NX99_08285) - 1815201..1815932 (+) 732 WP_084869367.1 ABC transporter ATP-binding protein -
  NX99_RS08435 (NX99_08290) - 1815935..1817524 (+) 1590 WP_084915324.1 ABC transporter permease -
  NX99_RS08440 (NX99_08295) proB 1817644..1818447 (+) 804 WP_014635008.1 glutamate 5-kinase -

Sequence

Protein


Download         Length: 1217 a.a.        Molecular weight: 138094.15 Da        Isoelectric Point: 4.7158

>NTDB_id=153072 NX99_RS08420 WP_084915322.1 1810191..1813844(+) (rexA) [Streptococcus salivarius strain ATCC 27945]
MLTKAFLSPTEIKERIAQEAASDKERKLTPEQIEAIYSNGSNILVSASAGSGKTFVMVERILDMIGRGVGIDQLFISTFT
VKAAGELKERLEKRLTEQLGQVETDEERAFLSDQIAKIGTADIGTMDAFTQKLVNQYGYLLGVSPIFRIMTDPAEQTLMK
NEVYADLFNDYMQGKDAQLFQKLVRNFAGNGKTSKAFRDLVYDVYNFSQATAGPEKWLRQNLLKGQAEANPDKAKAELLE
GLKDGLLADFLAFLRDHLGLAQREFAKAKYLNNVSDAISLLEGALANDQTDMEDLLKQLLTLSGGTGLTNMTRPKDEELK
AYKEAYNKTKNEFVAQLRELDTQLTVLEVLNKHNDDILPLLELLQAFVLDFSDQYLQAKIQENAFEFSDIAHFAIRILEE
NPEVAACYCDRYHEVMVDEYQDNSHTQERMLELLSNGHNRFMVGDIKQSIYRFRQADPQIFNGKFQLFLENPDAGKLILL
KENFRSQSEVLDATNGVFSHLMDQEIGDILYDKTHMLVAGSDKQKEPHPENETEVLIYNSDEASETPDEEGADQPISSGE
ISLVIKEIINLHKQGVRFEDITLLAPTRNTYLDLMASFEEHGIPLVPDEYKSSYLESLEVMIMLDTLRAINNPLNDYALV
ALLRSPMFNFNEDDLARIAVQADKGQFYDKLLAAHTKSGLHPEVVTQGLEAKLTLFIETLSDWRDYSKWHSLYDLIWKIY
DDRFYYDYVGSLPRAEQRQANLYALALRANAYEKTGFKGLSRFIGMIDKIISSGNDLEEVTDLVPRNAVSLMTIHKSKGL
EFKYVFVLQMNRKFIGHSKDGLSGKYIINREKGLGIKYLADLKDQVNTNLPKLNVVLETLTFQENRREERRASISEEMRL
LYVAMTRAEKKLYLVGKGSKEKLTQQFGTDVENNRLPVALRDQIATYQDWVMALDTAFMRKDLKFTVRFVEAEELTPEAI
GQVEVQATVDADDLSNNRQTEDIKRALTVLESVEKLNQLYAPAIDLPSVRTPSQLKAFYEPVMDTEGVDIMDKKEEVQPL
ETSTSFELPDFGQKTKVTGAAVGSATHELMQRLSLSDKVTLQDLTQALSRVSADDQVKARVQLEKLLGFFDTELGKLILA
NRDKLRREAPFAMLAEDPASKEDFVVRGIIDGYLLLEDRIVLFDYKTDRFTQPGELKERYKGQMSLYAKALSQAYQMEKI
DKYLILLGGKNLEVVEV

Nucleotide


Download         Length: 3654 bp        

>NTDB_id=153072 NX99_RS08420 WP_084915322.1 1810191..1813844(+) (rexA) [Streptococcus salivarius strain ATCC 27945]
ATGTTGACTAAAGCTTTTTTAAGTCCAACAGAGATTAAGGAACGCATTGCCCAAGAAGCAGCTTCTGACAAGGAACGCAA
GTTAACACCTGAGCAGATTGAGGCCATTTACAGTAATGGTAGTAATATTCTTGTGTCAGCTTCGGCGGGATCAGGAAAAA
CCTTTGTCATGGTTGAGCGTATCCTTGATATGATTGGACGTGGTGTTGGCATTGACCAACTCTTTATCTCAACCTTTACG
GTAAAGGCCGCAGGTGAGTTAAAAGAGCGTCTGGAAAAACGTCTGACAGAGCAGCTGGGACAGGTAGAGACAGATGAAGA
GCGTGCCTTTCTTTCAGATCAGATTGCCAAGATTGGAACGGCTGATATTGGAACTATGGATGCCTTTACCCAGAAATTGG
TCAATCAGTATGGCTATCTCCTGGGGGTGTCACCTATTTTCCGCATTATGACAGATCCTGCCGAGCAGACACTTATGAAA
AATGAGGTTTATGCCGATCTTTTCAACGATTACATGCAAGGAAAGGATGCCCAACTTTTCCAAAAATTGGTCCGCAACTT
CGCAGGAAATGGCAAGACTAGTAAGGCTTTTCGTGATTTAGTTTACGATGTCTATAACTTTTCTCAGGCTACTGCAGGTC
CTGAAAAATGGCTACGTCAAAATCTTTTAAAAGGGCAGGCAGAGGCCAATCCAGACAAAGCTAAAGCTGAGCTTTTAGAG
GGGCTCAAAGATGGCTTGTTGGCTGATTTCTTAGCCTTCTTAAGAGACCATCTAGGTCTAGCTCAGCGTGAATTTGCCAA
GGCCAAATATCTAAATAATGTGTCAGATGCCATTAGCCTTCTTGAAGGAGCTTTGGCCAATGACCAAACGGATATGGAGG
ACTTGCTCAAACAACTCTTGACTTTGTCAGGAGGGACTGGTTTGACCAATATGACCCGTCCTAAAGACGAGGAACTCAAG
GCCTACAAGGAAGCTTACAACAAGACCAAAAATGAGTTTGTGGCCCAGTTGCGAGAGCTTGATACCCAGCTAACAGTCCT
CGAGGTTTTGAACAAGCATAATGATGACATCCTACCTTTGTTGGAGTTGCTTCAGGCCTTTGTACTTGATTTTTCGGACC
AGTATTTACAGGCCAAGATTCAGGAAAATGCTTTTGAATTCTCAGATATTGCCCATTTTGCCATCCGTATTTTGGAGGAA
AATCCAGAGGTGGCAGCTTGCTACTGTGACCGTTACCATGAAGTAATGGTAGATGAGTATCAGGACAATAGCCATACCCA
AGAACGCATGTTGGAACTCCTATCTAATGGACACAACCGATTCATGGTGGGAGATATCAAACAATCCATCTATCGTTTCC
GTCAGGCAGACCCTCAGATTTTTAATGGTAAGTTCCAGCTTTTCCTTGAAAATCCAGATGCAGGTAAGCTGATTCTCCTT
AAAGAGAATTTTCGTAGTCAATCTGAGGTTCTTGATGCGACCAATGGTGTTTTCAGTCACCTCATGGATCAGGAAATCGG
AGACATCCTCTATGACAAGACTCACATGCTGGTAGCGGGTAGCGATAAGCAAAAAGAACCCCATCCTGAAAATGAGACAG
AGGTTCTGATTTACAATAGTGATGAAGCGAGTGAAACTCCTGACGAAGAAGGTGCTGATCAACCTATTAGTAGCGGCGAG
ATTTCCTTGGTTATCAAAGAAATCATCAACCTTCATAAGCAGGGTGTACGTTTTGAGGATATTACCCTCCTAGCACCAAC
CCGTAACACCTATCTGGACTTGATGGCAAGCTTTGAGGAGCACGGAATTCCCTTGGTTCCTGACGAGTACAAGTCAAGCT
ACCTAGAGTCACTAGAAGTTATGATTATGTTGGATACCCTTCGTGCCATCAATAATCCTCTCAACGACTACGCCTTGGTT
GCCCTCCTTCGTTCACCGATGTTTAACTTCAACGAGGACGACCTGGCTCGGATTGCTGTTCAGGCTGACAAAGGACAATT
CTATGACAAGCTTCTTGCAGCTCATACTAAATCAGGACTTCATCCAGAAGTTGTCACACAAGGACTTGAGGCCAAGTTGA
CTCTCTTCATTGAGACTCTGTCAGATTGGCGTGATTACAGTAAGTGGCACTCGCTCTATGACCTCATTTGGAAGATTTAC
GACGATCGTTTCTATTATGATTATGTTGGCAGTCTTCCACGAGCTGAGCAACGCCAGGCCAATCTCTACGCCCTTGCCTT
GCGTGCCAATGCCTATGAAAAGACTGGCTTTAAGGGACTTTCTCGTTTTATTGGTATGATTGATAAAATCATTTCTAGCG
GTAACGACCTAGAGGAAGTGACAGACTTGGTTCCCAGAAATGCCGTTAGCCTCATGACCATTCACAAGTCCAAGGGACTA
GAGTTCAAGTATGTCTTTGTCTTGCAGATGAATCGCAAGTTTATTGGTCACAGCAAGGACGGTCTAAGTGGCAAGTACAT
CATCAACCGTGAAAAAGGACTAGGCATTAAGTATCTAGCTGACCTCAAAGACCAGGTAAATACCAATTTGCCTAAGTTAA
ATGTTGTTCTCGAGACCTTAACCTTCCAGGAAAATCGTAGGGAAGAACGCCGAGCAAGTATCTCAGAAGAGATGCGTCTG
CTCTATGTTGCAATGACCCGTGCAGAGAAAAAACTCTACCTAGTTGGTAAGGGCAGTAAGGAGAAATTGACCCAGCAATT
TGGCACGGATGTTGAAAATAATCGTTTACCAGTAGCTCTACGTGACCAAATCGCTACTTATCAGGATTGGGTTATGGCTT
TGGATACTGCCTTCATGAGAAAGGATCTCAAGTTTACTGTTCGCTTTGTTGAGGCTGAGGAGTTGACTCCAGAGGCTATT
GGTCAGGTTGAAGTTCAAGCAACAGTAGATGCTGATGATCTATCTAACAATCGCCAGACGGAAGACATTAAGCGTGCCCT
AACTGTCTTAGAAAGTGTTGAAAAACTCAATCAACTTTATGCACCAGCGATTGACCTGCCATCTGTGCGTACGCCGAGCC
AGCTCAAAGCCTTCTACGAACCTGTCATGGATACTGAAGGGGTGGATATTATGGACAAGAAAGAGGAGGTACAACCTCTG
GAGACATCCACTAGCTTTGAGCTTCCAGATTTTGGGCAAAAAACGAAGGTCACTGGAGCTGCAGTTGGTTCAGCCACCCA
TGAACTCATGCAACGCTTGAGTCTTTCTGACAAGGTGACCCTCCAAGATTTGACACAGGCCTTGAGTCGAGTATCGGCAG
ATGATCAAGTCAAGGCGCGTGTGCAGTTAGAAAAGCTACTAGGCTTTTTTGACACCGAACTTGGAAAGCTCATTCTAGCT
AACCGTGATAAGTTGCGTCGCGAAGCGCCATTTGCCATGTTGGCAGAAGATCCCGCTAGTAAAGAAGACTTTGTCGTCCG
TGGTATTATCGATGGCTACCTTCTTCTTGAAGACCGTATTGTCCTCTTTGACTATAAGACAGACCGCTTCACTCAACCTG
GTGAGCTTAAGGAACGCTACAAGGGGCAAATGAGCCTCTATGCTAAAGCCCTCAGTCAAGCCTATCAAATGGAAAAGATT
GACAAATATCTTATTCTCCTAGGTGGAAAAAACTTGGAAGTCGTAGAAGTATAA

Domains

Predicted by InterProScan.

PD-(D/E)XK nuclease superfamily (PDDEXK_1)

(1059-1197)

UvrD-like helicase C-terminal domain (UvrD_C)

(478-894)

UvrD/REP helicase N-terminal domain (UvrD-helicase)

(28-464)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  rexA Streptococcus pneumoniae R6

50.776

100

0.511

Multiple sequence alignment