Detailed information    

insolico Bioinformatically predicted

Overview

Name   comFC/cflB   Type   Machinery gene
Locus tag   NX99_RS05190 Genome accession   NZ_CP015282
Coordinates   1194192..1194854 (-) Length   220 a.a.
NCBI ID   WP_002883740.1    Uniprot ID   -
Organism   Streptococcus salivarius strain ATCC 27945     
Function   ssDNA transport into the cell (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 1189192..1199854
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  NX99_RS05185 (NX99_05100) hpf 1193565..1194113 (-) 549 WP_002883786.1 ribosome hibernation-promoting factor, HPF/YfiA family -
  NX99_RS05190 (NX99_05105) comFC/cflB 1194192..1194854 (-) 663 WP_002883740.1 ComF family protein Machinery gene
  NX99_RS05195 (NX99_05110) comFA/cflA 1194835..1196154 (-) 1320 WP_084915017.1 DEAD/DEAH box helicase Machinery gene
  NX99_RS05200 (NX99_05115) - 1196209..1196835 (+) 627 WP_048674260.1 YigZ family protein -
  NX99_RS05205 (NX99_05120) cysK 1196937..1197863 (+) 927 WP_002883742.1 cysteine synthase A -
  NX99_RS05210 (NX99_05125) - 1198041..1198700 (-) 660 WP_002883751.1 CBS and ACT domain-containing protein -
  NX99_RS05215 (NX99_05130) - 1198835..1199545 (-) 711 WP_002883761.1 ABC transporter ATP-binding protein -

Sequence

Protein


Download         Length: 220 a.a.        Molecular weight: 26191.45 Da        Isoelectric Point: 8.7453

>NTDB_id=153025 NX99_RS05190 WP_002883740.1 1194192..1194854(-) (comFC/cflB) [Streptococcus salivarius strain ATCC 27945]
MKCLLCNDWIESVPKLRDLITFNQREEYSCVSCKNQFKKLSKERCQNCNKELHRDTCIDCKLWMKKGYIPKHLAIYRYEE
NMKDYFSRYKFMGDYCLRKTFQKDIKNNLKRFFKKGYTIVPVPLSEERLVERGFNQVEGLIEGIPYQDIFEKRDIEKQSS
KTREERLSQDNAFCLKKGIDVPDKIIIVDDIYTTGSTLYHMVQLLEAIGIKEVLTFSLAR

Nucleotide


Download         Length: 663 bp        

>NTDB_id=153025 NX99_RS05190 WP_002883740.1 1194192..1194854(-) (comFC/cflB) [Streptococcus salivarius strain ATCC 27945]
ATGAAGTGTCTACTATGTAATGATTGGATTGAATCAGTGCCAAAATTAAGAGACCTGATTACGTTTAACCAAAGAGAAGA
GTACTCCTGCGTATCTTGTAAAAATCAGTTTAAAAAACTTTCAAAAGAAAGATGTCAAAATTGTAATAAGGAGTTACATA
GAGATACCTGTATTGATTGTAAACTTTGGATGAAAAAAGGCTATATTCCTAAGCACCTTGCCATTTATCGCTATGAAGAA
AACATGAAAGATTATTTTAGCCGCTATAAATTTATGGGAGACTATTGTCTTAGAAAAACATTTCAAAAAGATATAAAAAA
TAATTTAAAACGATTTTTTAAAAAAGGTTATACCATAGTGCCGGTCCCATTGTCGGAAGAACGCTTGGTAGAAAGAGGGT
TCAACCAAGTTGAGGGATTAATAGAGGGAATTCCCTATCAGGATATCTTTGAGAAAAGAGATATTGAGAAGCAATCATCG
AAAACACGTGAGGAGCGTTTAAGTCAAGATAATGCCTTCTGTCTCAAGAAAGGTATAGATGTACCAGATAAGATTATTAT
AGTGGATGATATCTATACAACAGGATCCACTTTATATCATATGGTTCAACTATTAGAAGCTATAGGTATTAAAGAAGTTT
TGACCTTTTCACTAGCTAGATAA

Domains

Predicted by InterProScan.

Phosphoribosyl transferase domain (Pribosyltran)

(176-215)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comFC/cflB Streptococcus mitis NCTC 12261

45.495

100

0.459
  comFC/cflB Streptococcus mitis SK321

45.045

100

0.455
  comFC/cflB Streptococcus pneumoniae Rx1

44.595

100

0.45
  comFC/cflB Streptococcus pneumoniae D39

44.595

100

0.45
  comFC/cflB Streptococcus pneumoniae R6

44.595

100

0.45
  comFC/cflB Streptococcus pneumoniae TIGR4

44.595

100

0.45