Detailed information    

insolico Bioinformatically predicted

Overview

Name   uvrB   Type   Machinery gene
Locus tag   CJJRM1285_RS03280 Genome accession   NZ_CP015209
Coordinates   629525..631498 (-) Length   657 a.a.
NCBI ID   WP_002856888.1    Uniprot ID   -
Organism   Campylobacter jejuni subsp. jejuni strain RM1285     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 624525..636498
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  CJJRM1285_RS03265 (CjjRM1285_0641) kdpB 624941..626986 (+) 2046 WP_002856841.1 potassium-transporting ATPase subunit KdpB -
  CJJRM1285_RS03270 (CjjRM1285_0642) kdpC 626988..627596 (+) 609 WP_002856979.1 potassium-transporting ATPase subunit KdpC -
  CJJRM1285_RS03275 (CjjRM1285_0643) kdpD 627599..629530 (+) 1932 WP_002856839.1 sensor histidine kinase -
  CJJRM1285_RS03280 (CjjRM1285_0644) uvrB 629525..631498 (-) 1974 WP_002856888.1 excinuclease ABC subunit UvrB Machinery gene
  CJJRM1285_RS03285 (CjjRM1285_0645) - 631652..631882 (+) 231 WP_002852327.1 hypothetical protein -
  CJJRM1285_RS03290 (CjjRM1285_0646) - 631872..632114 (+) 243 WP_002854947.1 hypothetical protein -
  CJJRM1285_RS03295 (CjjRM1285_0647) Cj0683 632111..632548 (+) 438 WP_002852324.1 prepilin-type N-terminal cleavage/methylation domain-containing protein Machinery gene
  CJJRM1285_RS03300 (CjjRM1285_0648) priA 632530..634383 (+) 1854 WP_002856756.1 primosomal protein N' -
  CJJRM1285_RS03305 (CjjRM1285_0649) cipA 634393..635787 (-) 1395 WP_002896028.1 DUF2972 domain-containing protein -

Sequence

Protein


Download         Length: 657 a.a.        Molecular weight: 75934.56 Da        Isoelectric Point: 7.2235

>NTDB_id=152296 CJJRM1285_RS03280 WP_002856888.1 629525..631498(-) (uvrB) [Campylobacter jejuni subsp. jejuni strain RM1285]
MLELTSEFKPSPDQQEAIKGIVKSIKKGNKYQTLLGVTGSGKTFTMANVIKELNIPTLIMSHNKSLCAQLYSEFKGFFSK
NHVEYFISYYDYYQPEAYIPRTDVFIEKDSSTNEDLERLRLSATASLLSYEDVVCIASVSANYGLGNPNEYIGMVLIFEL
GMQISQKELLKKLVDMGYKRNDNFFDRADFRVQGDIIDIYPAYYEDEVVRLEFFGDELDAMYHYNVLENKKGKDLKRFIL
YPTSQFSVGETRLKQAIKDIKAELNERLAYFEHENKLVEYQRLKQRVEFDLEMLTSTGMCKGVENYARHLTGLKEGDTPY
TLFDYFAIKDRKFLVIVDESHVSLPQFRGMFAGDRSRKQTLVDYGFRLPSALDNRPLMFDEFIHKNCQFLFVSATPAPLE
LELSKENIFHQIMRPTGLLDPLIELKDSDNQVEILFDEAKKVIQRNERVLVTVLTKKLAEELTRYYLKLGIKVKYMHSDI
DAIERNEIIRGLRSGAFDMLIGINLLREGLDLPEVSLIAIMDADKEGFLRSTTSLIQTMGRAARNVNGKVLLFCKKITKS
MQEAMDTTNERRKLQMAYNKKYNITPTSVKRHIEESLKNEEDLGEIYRKGKKLEKMPASERAKLVKELRKQMLEAAKALE
FEKAAAIRDEINKLRDL

Nucleotide


Download         Length: 1974 bp        

>NTDB_id=152296 CJJRM1285_RS03280 WP_002856888.1 629525..631498(-) (uvrB) [Campylobacter jejuni subsp. jejuni strain RM1285]
ATGTTAGAACTTACCAGCGAATTTAAACCCAGTCCCGATCAACAAGAAGCCATAAAAGGCATAGTAAAAAGTATAAAAAA
AGGCAACAAATATCAAACTTTACTAGGCGTTACAGGAAGTGGAAAAACCTTTACCATGGCAAATGTCATTAAAGAACTTA
ATATACCTACTCTTATCATGAGTCACAACAAAAGCCTTTGCGCTCAACTTTATAGCGAATTTAAAGGCTTTTTTTCTAAA
AATCATGTGGAATATTTTATATCTTATTATGATTATTATCAACCTGAAGCCTATATCCCACGCACTGATGTTTTCATAGA
AAAAGACAGCTCGACTAATGAAGACTTAGAGCGTTTAAGACTGAGTGCTACTGCTTCACTTTTAAGTTATGAAGATGTAG
TTTGCATAGCTAGTGTTTCAGCAAATTATGGACTTGGTAATCCAAATGAATACATAGGCATGGTTTTAATCTTTGAACTA
GGTATGCAAATTTCACAAAAAGAACTTTTAAAAAAACTTGTAGATATGGGTTATAAAAGAAATGATAATTTTTTTGATCG
TGCGGATTTTAGAGTTCAAGGAGATATTATAGACATTTATCCAGCTTATTATGAAGATGAAGTGGTAAGACTTGAATTTT
TTGGCGATGAGCTTGATGCTATGTATCATTACAATGTTTTAGAAAATAAAAAAGGCAAAGATTTAAAACGCTTTATACTC
TATCCTACAAGCCAGTTTAGCGTGGGCGAAACAAGATTAAAACAAGCGATAAAAGATATCAAAGCAGAACTTAACGAACG
CCTTGCTTATTTTGAACATGAAAATAAACTCGTAGAATATCAACGCCTTAAACAAAGGGTTGAATTTGATCTTGAAATGC
TTACAAGCACAGGAATGTGTAAAGGAGTTGAAAACTATGCAAGGCATTTAACAGGACTTAAAGAAGGTGATACTCCTTAT
ACGCTTTTTGATTATTTTGCGATTAAAGATAGAAAATTTCTTGTCATAGTCGATGAAAGTCATGTATCTTTACCTCAATT
TCGTGGTATGTTTGCAGGAGATAGAAGCAGAAAACAGACCTTGGTGGATTATGGTTTTCGTTTGCCTTCAGCCTTGGATA
ACCGTCCTTTAATGTTTGATGAATTTATCCATAAAAATTGTCAATTTCTTTTTGTTTCAGCTACACCTGCACCTTTAGAA
CTTGAACTTAGCAAAGAAAATATCTTTCATCAAATCATGCGTCCTACGGGACTGCTTGATCCTTTAATAGAGTTAAAAGA
TAGCGATAATCAGGTTGAAATTTTATTTGATGAGGCTAAAAAAGTCATACAAAGAAACGAACGGGTTTTAGTAACCGTGC
TAACTAAAAAACTCGCTGAAGAGCTTACAAGGTATTATTTAAAGCTTGGTATAAAAGTCAAATACATGCACTCAGATATC
GATGCTATAGAACGCAATGAAATCATAAGAGGTTTAAGAAGTGGTGCTTTTGATATGCTAATTGGCATTAACTTACTTAG
AGAAGGACTAGACCTACCTGAAGTTTCACTCATTGCCATTATGGATGCAGATAAGGAAGGCTTTTTAAGAAGTACTACAA
GTTTAATCCAAACCATGGGAAGAGCAGCTAGAAATGTCAATGGTAAGGTTTTGCTTTTTTGCAAAAAAATCACAAAATCC
ATGCAAGAAGCTATGGATACCACCAATGAACGCCGCAAACTTCAAATGGCTTATAATAAAAAATACAATATCACACCAAC
TTCAGTCAAACGCCATATTGAAGAGAGTTTAAAAAATGAAGAGGATTTAGGCGAAATTTATCGCAAAGGTAAAAAACTAG
AAAAAATGCCTGCTAGCGAAAGAGCAAAGCTTGTCAAAGAGTTAAGAAAGCAAATGCTTGAAGCAGCCAAAGCACTTGAG
TTTGAAAAAGCTGCCGCAATTAGAGATGAGATTAATAAATTAAGGGATTTATAA

Domains

Predicted by InterProScan.

UvrB/uvrC motif (UVR)

(623-656)

Type III restriction enzyme, res subunit (ResIII)

(8-116)

Ultra-violet resistance protein B (UvrB)

(552-593)

Helicase conserved C-terminal domain (Helicase_C)

(439-544)

UvrB interaction domain (UvrB_inter)

(158-246)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  uvrB Streptococcus pneumoniae R6

50.772

98.63

0.501
  uvrB Streptococcus pneumoniae TIGR4

50.772

98.63

0.501
  uvrB Streptococcus pneumoniae D39

50.772

98.63

0.501