Detailed information    

insolico Bioinformatically predicted

Overview

Name   ssb   Type   Machinery gene
Locus tag   ACZ81_RS00985 Genome accession   NZ_CP012202
Coordinates   216947..217531 (+) Length   194 a.a.
NCBI ID   WP_014947881.1    Uniprot ID   A0AB32ZTF8
Organism   Alteromonas macleodii strain HOT1A3     
Function   ssDNA binding (predicted from homology)   
DNA processing

Genomic Context

Location: 211947..222531
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  ACZ81_RS00970 (ACZ81_00975) - 212572..213627 (+) 1056 WP_014947878.1 UDP-glucose--hexose-1-phosphate uridylyltransferase -
  ACZ81_RS00975 (ACZ81_00980) galK 213620..214759 (+) 1140 WP_061439037.1 galactokinase -
  ACZ81_RS00980 (ACZ81_00985) - 215117..216679 (+) 1563 WP_014975374.1 sodium/sugar symporter -
  ACZ81_RS00985 (ACZ81_00990) ssb 216947..217531 (+) 585 WP_014947881.1 single-stranded DNA-binding protein Machinery gene
  ACZ81_RS00990 (ACZ81_00995) - 217740..218693 (+) 954 WP_061439040.1 hypothetical protein -
  ACZ81_RS00995 (ACZ81_01000) - 218873..220159 (+) 1287 WP_069943577.1 alpha/beta hydrolase family protein -
  ACZ81_RS01000 (ACZ81_01005) - 220238..222367 (-) 2130 WP_061439044.1 alpha-galactosidase -

Sequence

Protein


Download         Length: 194 a.a.        Molecular weight: 21128.03 Da        Isoelectric Point: 4.9658

>NTDB_id=152185 ACZ81_RS00985 WP_014947881.1 216947..217531(+) (ssb) [Alteromonas macleodii strain HOT1A3]
MATKGVNKVILVGNLGNDPEVRYMPNGNAVANLSLATSESWKDQQGQVQERTEWHRLTMYRRLAEIAGEYLKKGSQIYVE
GKLQTRKWQDQQGQDKYTTEIIVDQMQMLGGRGGEGGGGNGGYQRPQNNQGGYNQAPAQGGYNQAPQQGGGQQGGYNSNQ
GGGYNQAPQGGNQGQPKNPPMAEPDFDFDDDIPF

Nucleotide


Download         Length: 585 bp        

>NTDB_id=152185 ACZ81_RS00985 WP_014947881.1 216947..217531(+) (ssb) [Alteromonas macleodii strain HOT1A3]
ATGGCAACGAAAGGCGTTAATAAGGTTATTCTTGTTGGAAACCTTGGCAATGATCCTGAAGTTAGATACATGCCTAACGG
AAACGCCGTTGCGAACTTAAGCCTAGCAACTAGCGAAAGCTGGAAAGACCAACAGGGTCAGGTTCAAGAGCGCACTGAGT
GGCACCGCCTTACAATGTACCGTCGCTTAGCAGAAATTGCCGGAGAGTACCTGAAAAAGGGCTCGCAAATTTATGTTGAA
GGTAAATTGCAAACACGTAAGTGGCAAGATCAGCAAGGCCAAGATAAATACACCACTGAAATTATCGTAGACCAAATGCA
AATGCTTGGCGGTCGCGGCGGTGAAGGCGGTGGTGGTAACGGTGGTTACCAACGTCCTCAGAACAACCAAGGTGGTTACA
ACCAGGCGCCTGCACAAGGCGGTTATAACCAAGCGCCACAGCAAGGTGGTGGTCAGCAGGGCGGCTACAACTCAAACCAA
GGTGGCGGCTACAATCAAGCGCCTCAAGGTGGCAATCAAGGTCAGCCAAAGAACCCACCAATGGCTGAGCCAGATTTTGA
CTTCGACGATGACATTCCGTTCTAA

Domains

Predicted by InterproScan.

Single-strand binding protein family (SSB)

(6-109)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  ssb Glaesserella parasuis strain SC1401

56

100

0.577
  ssb Vibrio cholerae strain A1552

54.5

100

0.562
  ssb Neisseria meningitidis MC58

46.354

98.969

0.459
  ssb Neisseria gonorrhoeae MS11

46.354

98.969

0.459

Multiple sequence alignment