Detailed information    

insolico Bioinformatically predicted

Overview

Name   ssb   Type   Machinery gene
Locus tag   DB34_RS03365 Genome accession   NZ_CP012111
Coordinates   730723..731280 (+) Length   185 a.a.
NCBI ID   WP_050818782.1    Uniprot ID   -
Organism   Acetobacter pasteurianus strain Ab3     
Function   ssDNA binding (predicted from homology)   
DNA processing

Genomic Context

Location: 725723..736280
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  DB34_RS03340 (DB34_03355) - 725858..727426 (-) 1569 WP_050818773.1 Do family serine endopeptidase -
  DB34_RS03345 (DB34_03360) - 727602..728057 (-) 456 WP_050818774.1 nucleoside deaminase -
  DB34_RS14085 - 728278..728430 (+) 153 WP_003626506.1 hypothetical protein -
  DB34_RS03350 (DB34_03365) - 728557..729288 (+) 732 WP_050818776.1 gamma-glutamyl-gamma-aminobutyrate hydrolase family protein -
  DB34_RS03355 (DB34_03370) - 729285..730061 (+) 777 WP_050818778.1 pseudouridine synthase -
  DB34_RS03360 (DB34_03375) rsmD 730061..730645 (+) 585 WP_050818780.1 16S rRNA (guanine(966)-N(2))-methyltransferase RsmD -
  DB34_RS03365 (DB34_03380) ssb 730723..731280 (+) 558 WP_050818782.1 single-stranded DNA-binding protein Machinery gene
  DB34_RS03370 (DB34_03385) - 731344..732618 (+) 1275 WP_050818784.1 O-antigen ligase -
  DB34_RS03375 (DB34_03390) dksA 732834..733247 (+) 414 WP_003626519.1 RNA polymerase-binding protein DksA -
  DB34_RS14250 (DB34_03400) - 733489..734748 (+) 1260 WP_050818786.1 site-specific integrase -
  DB34_RS03390 (DB34_03405) - 734745..735446 (-) 702 WP_050818789.1 hypothetical protein -
  DB34_RS03395 (DB34_03410) - 735430..736017 (-) 588 WP_050818791.1 recombinase family protein -

Sequence

Protein


Download         Length: 185 a.a.        Molecular weight: 19738.42 Da        Isoelectric Point: 5.3755

>NTDB_id=151428 DB34_RS03365 WP_050818782.1 730723..731280(+) (ssb) [Acetobacter pasteurianus strain Ab3]
MAGSVNKVILVGNLGKDPEVRASQSGAKIVSFSLATSDTWNDRASGERRERTEWHRVVIFNERLADVAERFLRKGRKVYL
EGSLQTRKWTDQGGQERYTTEVIIDRFRGELVLLDSRNSGEGESEGGGFGGGSGSSYGGYNSGGGGYGAPSSAPRQQPAQ
RSGGNSSGGWDASGGNGDLDDEIPF

Nucleotide


Download         Length: 558 bp        

>NTDB_id=151428 DB34_RS03365 WP_050818782.1 730723..731280(+) (ssb) [Acetobacter pasteurianus strain Ab3]
ATGGCTGGCAGCGTTAACAAGGTTATTCTGGTCGGCAATCTGGGCAAGGACCCCGAAGTGCGTGCCAGCCAGAGCGGTGC
AAAGATTGTTTCCTTCTCTCTGGCCACCAGCGACACATGGAATGACCGCGCATCTGGTGAACGACGTGAACGCACAGAAT
GGCATCGCGTGGTCATTTTCAATGAACGTCTGGCAGATGTGGCCGAACGTTTCCTGCGCAAAGGCCGCAAAGTTTATCTG
GAAGGCTCTCTGCAAACCCGTAAATGGACAGACCAGGGTGGGCAGGAACGCTATACAACGGAAGTGATTATTGACCGTTT
CCGTGGTGAGCTGGTGCTGCTGGATAGCCGCAATAGTGGCGAAGGCGAAAGTGAAGGCGGCGGCTTTGGTGGCGGAAGCG
GCAGCAGCTACGGTGGCTATAATAGTGGCGGCGGTGGTTATGGCGCCCCATCATCCGCCCCACGCCAGCAACCAGCACAA
CGCAGCGGTGGCAATAGCTCCGGCGGCTGGGATGCATCTGGAGGCAACGGCGATCTTGATGACGAAATCCCGTTCTAA

Domains

Predicted by InterproScan.

Single-strand binding protein family (SSB)

(5-107)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  ssb Glaesserella parasuis strain SC1401

47.475

100

0.508
  ssb Vibrio cholerae strain A1552

43.956

98.378

0.432
  ssb Neisseria meningitidis MC58

38.462

98.378

0.378
  ssb Neisseria gonorrhoeae MS11

37.912

98.378

0.373

Multiple sequence alignment