Detailed information
Bioinformatically predicted
Overview
| Name | ssb | Type | Machinery gene |
| Locus tag | ADJ80_RS03625 | Genome accession | NZ_CP012067 |
| Coordinates | 737989..738465 (+) | Length | 158 a.a. |
| NCBI ID | WP_050692978.1 | Uniprot ID | - |
| Organism | Aggregatibacter aphrophilus strain W10433 | ||
| Function | ssDNA binding (predicted from homology) DNA processing |
||
Genomic Context
Location: 732989..743465
| Locus tag | Gene name | Coordinates (strand) | Size (bp) | Protein ID | Product | Description |
|---|---|---|---|---|---|---|
| ADJ80_RS03605 (ADJ80_03620) | secM | 733744..734061 (-) | 318 | WP_005701843.1 | secA translation cis-regulator SecM | - |
| ADJ80_RS03610 (ADJ80_03625) | - | 734153..734464 (+) | 312 | WP_005704464.1 | DciA family protein | - |
| ADJ80_RS03615 (ADJ80_03630) | - | 734503..734919 (+) | 417 | WP_005704465.1 | MerR family transcriptional regulator | - |
| ADJ80_RS03620 (ADJ80_03635) | uvrA | 734988..737819 (-) | 2832 | WP_050692977.1 | excinuclease ABC subunit UvrA | - |
| ADJ80_RS03625 (ADJ80_03640) | ssb | 737989..738465 (+) | 477 | WP_050692978.1 | single-stranded DNA-binding protein | Machinery gene |
| ADJ80_RS03630 (ADJ80_03645) | - | 738979..739350 (+) | 372 | WP_050692979.1 | hypothetical protein | - |
| ADJ80_RS03635 (ADJ80_03650) | - | 739642..740490 (+) | 849 | WP_050692980.1 | aldo/keto reductase | - |
| ADJ80_RS03640 (ADJ80_03655) | ygiD | 740689..741474 (+) | 786 | WP_080988233.1 | 4,5-DOPA dioxygenase extradiol | - |
| ADJ80_RS03645 (ADJ80_03660) | - | 741754..742122 (-) | 369 | WP_005701820.1 | rhodanese-like domain-containing protein | - |
| ADJ80_RS03650 (ADJ80_03665) | - | 742446..743300 (-) | 855 | WP_050692982.1 | Dam family site-specific DNA-(adenine-N6)-methyltransferase | - |
Sequence
Protein
Download Length: 158 a.a. Molecular weight: 17647.46 Da Isoelectric Point: 5.3111
>NTDB_id=151023 ADJ80_RS03625 WP_050692978.1 737989..738465(+) (ssb) [Aggregatibacter aphrophilus strain W10433]
MAGVNKVIIVGNLGNDPEIRTMPNGEAVANITVATSESWNDKNTGERREVTEWHRIVFYRRQAEVAGEYLRKGSKVYVEG
RLRTRKWQDQNGQDRYTTEIQGDVLQMLDSRSDRQSGGYAPAAQPSYPSQAQSAPRATPASKPASEAPMDNFDDDIPF
MAGVNKVIIVGNLGNDPEIRTMPNGEAVANITVATSESWNDKNTGERREVTEWHRIVFYRRQAEVAGEYLRKGSKVYVEG
RLRTRKWQDQNGQDRYTTEIQGDVLQMLDSRSDRQSGGYAPAAQPSYPSQAQSAPRATPASKPASEAPMDNFDDDIPF
Nucleotide
Download Length: 477 bp
>NTDB_id=151023 ADJ80_RS03625 WP_050692978.1 737989..738465(+) (ssb) [Aggregatibacter aphrophilus strain W10433]
ATGGCTGGAGTAAATAAAGTCATTATTGTTGGTAACTTAGGTAACGATCCTGAAATTCGTACCATGCCGAACGGCGAAGC
GGTTGCCAACATTACCGTTGCCACCAGTGAAAGCTGGAATGATAAAAACACCGGCGAACGTCGTGAAGTGACCGAATGGC
ATCGCATTGTGTTCTATCGCCGTCAGGCGGAAGTGGCGGGCGAATACCTACGAAAAGGCTCTAAAGTTTATGTTGAAGGG
CGTTTAAGAACCCGCAAATGGCAAGATCAAAACGGCCAAGATCGCTACACCACGGAAATTCAAGGCGACGTTTTACAAAT
GTTAGACAGCCGCTCTGATCGTCAATCCGGCGGCTACGCGCCGGCAGCACAACCAAGCTACCCAAGCCAAGCACAAAGTG
CGCCACGTGCAACCCCGGCAAGCAAACCGGCATCCGAAGCACCGATGGATAACTTTGATGATGATATTCCGTTCTAA
ATGGCTGGAGTAAATAAAGTCATTATTGTTGGTAACTTAGGTAACGATCCTGAAATTCGTACCATGCCGAACGGCGAAGC
GGTTGCCAACATTACCGTTGCCACCAGTGAAAGCTGGAATGATAAAAACACCGGCGAACGTCGTGAAGTGACCGAATGGC
ATCGCATTGTGTTCTATCGCCGTCAGGCGGAAGTGGCGGGCGAATACCTACGAAAAGGCTCTAAAGTTTATGTTGAAGGG
CGTTTAAGAACCCGCAAATGGCAAGATCAAAACGGCCAAGATCGCTACACCACGGAAATTCAAGGCGACGTTTTACAAAT
GTTAGACAGCCGCTCTGATCGTCAATCCGGCGGCTACGCGCCGGCAGCACAACCAAGCTACCCAAGCCAAGCACAAAGTG
CGCCACGTGCAACCCCGGCAAGCAAACCGGCATCCGAAGCACCGATGGATAACTTTGATGATGATATTCCGTTCTAA
3D structure
| Source | ID | Structure |
|---|
Similar proteins
Only experimentally validated proteins are listed.
| Protein | Organism | Identities (%) | Coverage (%) | Ha-value |
|---|---|---|---|---|
| ssb | Glaesserella parasuis strain SC1401 |
68.333 |
100 |
0.778 |
| ssb | Vibrio cholerae strain A1552 |
56.322 |
100 |
0.62 |
| ssb | Neisseria meningitidis MC58 |
47.727 |
100 |
0.532 |
| ssb | Neisseria gonorrhoeae MS11 |
47.727 |
100 |
0.532 |