Detailed information NTG0150737

Bioinformatically predicted

Overview

• Name: rpoS
• Type: Regulator
• Locus tag: PA1088_RS06785
• Genome accession: NZ_CP015001
• Coordinates: 1457872..1458876 (+)
• Length: 334 a.a.
• NCBI ID: WP_003113871.1
• Uniprot ID: A0A0H2ZEU1
• Organism: Pseudomonas aeruginosa strain PA1088
• Function: regulation of chitinases (predicted from homology) Competence regulation

Genomic Context

Location: 1452872..1463876

Locus tag	Gene name	Coordinates (strand)	Size (bp)	Protein ID	Product	Description
PA1088_RS06755 (PA1088_01348)	fghA	1452964..1453815 (+)	852	WP_009876912.1	S-formylglutathione hydrolase	-
PA1088_RS06760 (PA1088_01349)	ispF	1453886..1454359 (+)	474	WP_003098560.1	2-C-methyl-D-erythritol 2,4-cyclodiphosphate synthase	-
PA1088_RS06765 (PA1088_01350)	truD	1454356..1455423 (+)	1068	WP_003098559.1	tRNA pseudouridine(13) synthase TruD	-
PA1088_RS06770 (PA1088_01351)	surE	1455411..1456160 (+)	750	WP_003092341.1	5'/3'-nucleotidase SurE	-
PA1088_RS06775 (PA1088_01352)	-	1456193..1456828 (+)	636	WP_003098558.1	protein-L-isoaspartate(D-aspartate) O-methyltransferase	-
PA1088_RS06780	-	1456874..1457767 (+)	894	WP_003115226.1	peptidoglycan DD-metalloendopeptidase family protein	-
PA1088_RS06785 (PA1088_01354)	rpoS	1457872..1458876 (+)	1005	WP_003113871.1	RNA polymerase sigma factor RpoS	Regulator
PA1088_RS06790 (PA1088_01355)	fdxA	1459302..1459625 (-)	324	WP_003119354.1	ferredoxin FdxA	-
PA1088_RS06795 (PA1088_01356)	mutS	1459692..1462259 (-)	2568	WP_003113873.1	DNA mismatch repair protein MutS	-
PA1088_RS06800 (PA1088_01357)	-	1462385..1463392 (-)	1008	WP_003117491.1	TolB family protein	-

Sequence

Protein

• Length: 334 a.a.
• Molecular weight: 38235.38 Da
• Isoelectric Point: 5.0478

>NTDB_id=150737 PA1088_RS06785 WP_003113871.1 1457872..1458876(+) (rpoS) [Pseudomonas aeruginosa strain PA1088]
MALKKEGPEFDHDDEVLLLEPGIMLDESSADEQPSPRATPKATTSFSSKQHKHIDYTRALDATQLYLNEIGFSPLLTPEE
EVHFARLAQKGDPAGRKRMIESNLRLVVKIARRYVNRGLSLLDLIEEGNLGLIRAVEKFDPERGFRFSTYATWWIRQTIE
RAIMNQTRTIRLPIHVVKELNVYLRAARELTHKLDHEPSPEEIANLLEKPVAEVKRMLGLNERVTSVDVSLGPDSDKTLL
DTLTDDRPTDPCELLQDDDLSESIDQWLTELTDKQREVVIRRFGLRGHESSTLEEVGQEIGLTRERVRQIQVEALKRLRE
ILEKNGLSSDALFQ

Nucleotide

• Length: 1005 bp

>NTDB_id=150737 PA1088_RS06785 WP_003113871.1 1457872..1458876(+) (rpoS) [Pseudomonas aeruginosa strain PA1088]
ATGGCACTCAAAAAAGAAGGGCCGGAGTTTGACCACGATGATGAAGTGCTCCTCCTGGAGCCCGGCATCATGCTGGACGA
GTCGTCTGCCGACGAGCAGCCTTCTCCCCGGGCAACTCCAAAAGCCACCACTTCCTTCTCTTCCAAACAACACAAGCACA
TCGACTACACGCGCGCGTTGGACGCAACGCAGCTGTATCTCAACGAAATCGGTTTCTCGCCCCTGTTGACGCCCGAAGAG
GAAGTCCACTTCGCTCGTCTGGCGCAGAAGGGCGATCCCGCTGGTCGGAAGCGGATGATCGAGAGCAACCTGCGGTTGGT
GGTGAAGATCGCCCGGCGCTATGTCAATCGCGGACTGTCCCTGCTCGACCTGATCGAGGAAGGCAACCTAGGCCTGATCC
GCGCCGTGGAGAAGTTCGATCCGGAGCGCGGATTCCGGTTCTCGACCTACGCCACCTGGTGGATCCGCCAGACCATCGAA
CGGGCCATCATGAACCAGACCCGGACCATTCGCTTGCCGATCCATGTGGTCAAGGAGCTCAACGTCTACCTGCGTGCGGC
GCGGGAACTGACCCACAAGCTCGACCACGAACCTTCCCCCGAAGAAATCGCCAACCTGCTGGAGAAGCCGGTCGCCGAGG
TCAAGCGCATGCTCGGCCTGAACGAACGGGTGACTTCGGTGGACGTCTCTCTTGGTCCGGACTCGGACAAGACCCTGCTG
GATACGCTCACCGACGATCGCCCCACCGACCCGTGCGAGCTGCTGCAGGATGACGATCTCAGCGAAAGCATCGACCAGTG
GCTGACGGAACTCACCGACAAGCAGCGTGAGGTGGTGATTCGCCGCTTCGGCTTGCGCGGGCACGAAAGCAGCACGCTGG
AAGAGGTCGGCCAGGAAATCGGCCTGACCCGCGAGCGGGTTCGTCAGATCCAGGTCGAGGCGCTGAAGCGCCTGCGGGAG
ATCCTGGAGAAGAATGGCCTGTCGAGTGACGCGCTGTTCCAGTGA

Domains

Predicted by InterProScan.

• Sigma-70 region 3 (Sigma70_r3) (179-253)

• Sigma-70 region 2 (Sigma70_r2) (99-168)

• Sigma-70, region 4 (Sigma70_r4) (267-320)

• Sigma-70 factor, region 1.2 (Sigma70_r1_2) (61-94)

3D structure

• AlphaFold DB: A0A0H2ZEU1

Similar proteins

Only experimentally validated proteins are listed.

Protein	Organism	Identities (%)	Coverage (%)	Ha-value
rpoS	Vibrio cholerae O1 biovar El Tor strain E7946	66.463	98.204	0.653