Detailed information
Bioinformatically predicted
Overview
| Name | ssb | Type | Machinery gene |
| Locus tag | CA2015_RS08225 | Genome accession | NZ_CP012040 |
| Coordinates | 2003275..2003742 (+) | Length | 155 a.a. |
| NCBI ID | WP_048641477.1 | Uniprot ID | A0A0H4P9F0 |
| Organism | Cyclobacterium amurskyense strain KCTC 12363 | ||
| Function | ssDNA binding (predicted from homology) DNA processing |
||
Genomic Context
Location: 1998275..2008742
| Locus tag | Gene name | Coordinates (strand) | Size (bp) | Protein ID | Product | Description |
|---|---|---|---|---|---|---|
| CA2015_RS08200 (CA2015_1661) | - | 1998347..1998733 (-) | 387 | WP_048641472.1 | acyl-CoA thioesterase | - |
| CA2015_RS08205 (CA2015_1662) | - | 1999086..2000657 (-) | 1572 | WP_048641473.1 | Rne/Rng family ribonuclease | - |
| CA2015_RS08210 (CA2015_1663) | - | 2000835..2001656 (-) | 822 | WP_048641474.1 | tetratricopeptide repeat protein | - |
| CA2015_RS08215 (CA2015_1664) | - | 2001676..2001984 (-) | 309 | WP_048641475.1 | HU family DNA-binding protein | - |
| CA2015_RS08220 (CA2015_1665) | mutY | 2002146..2003228 (+) | 1083 | WP_048641476.1 | A/G-specific adenine glycosylase | - |
| CA2015_RS08225 (CA2015_1666) | ssb | 2003275..2003742 (+) | 468 | WP_048641477.1 | single-stranded DNA-binding protein | Machinery gene |
| CA2015_RS08230 (CA2015_1667) | gldE | 2003799..2005148 (+) | 1350 | WP_048641478.1 | gliding motility-associated protein GldE | - |
Sequence
Protein
Download Length: 155 a.a. Molecular weight: 16918.41 Da Isoelectric Point: 4.8129
>NTDB_id=150737 CA2015_RS08225 WP_048641477.1 2003275..2003742(+) (ssb) [Cyclobacterium amurskyense strain KCTC 12363]
MAGVNKVILLGNLGADPEVKHLEGDKVVANLRLATTESYKDRSGNRVENTEWHDLELWDGQARVAEQYLKKGSQIYVEGK
IKSDTWQDDQGNNRKRTKVRVQSFTMLGSRTGGQEDAQGGGQSSPAQNSNTNAGMNTSSTPAYDGNDSDADDLPF
MAGVNKVILLGNLGADPEVKHLEGDKVVANLRLATTESYKDRSGNRVENTEWHDLELWDGQARVAEQYLKKGSQIYVEGK
IKSDTWQDDQGNNRKRTKVRVQSFTMLGSRTGGQEDAQGGGQSSPAQNSNTNAGMNTSSTPAYDGNDSDADDLPF
Nucleotide
Download Length: 468 bp
>NTDB_id=150737 CA2015_RS08225 WP_048641477.1 2003275..2003742(+) (ssb) [Cyclobacterium amurskyense strain KCTC 12363]
ATGGCAGGAGTTAATAAAGTAATTTTATTGGGAAATCTGGGTGCAGACCCAGAAGTAAAGCACTTGGAAGGAGACAAAGT
AGTCGCAAACCTAAGGTTGGCTACTACAGAATCCTATAAAGACCGTTCTGGAAACCGCGTAGAAAATACTGAATGGCACG
ATTTGGAACTGTGGGATGGACAGGCCAGAGTTGCGGAACAATACTTGAAAAAAGGCAGTCAGATATATGTAGAGGGCAAA
ATAAAATCAGACACCTGGCAGGATGATCAGGGAAATAACCGTAAAAGGACCAAAGTAAGGGTACAGAGTTTTACCATGCT
CGGTTCAAGAACTGGCGGGCAAGAAGATGCCCAAGGTGGAGGACAGAGTAGCCCCGCTCAAAACTCTAATACAAACGCTG
GAATGAACACTTCTTCTACCCCAGCTTATGATGGCAATGACAGCGATGCAGATGATTTACCATTTTAA
ATGGCAGGAGTTAATAAAGTAATTTTATTGGGAAATCTGGGTGCAGACCCAGAAGTAAAGCACTTGGAAGGAGACAAAGT
AGTCGCAAACCTAAGGTTGGCTACTACAGAATCCTATAAAGACCGTTCTGGAAACCGCGTAGAAAATACTGAATGGCACG
ATTTGGAACTGTGGGATGGACAGGCCAGAGTTGCGGAACAATACTTGAAAAAAGGCAGTCAGATATATGTAGAGGGCAAA
ATAAAATCAGACACCTGGCAGGATGATCAGGGAAATAACCGTAAAAGGACCAAAGTAAGGGTACAGAGTTTTACCATGCT
CGGTTCAAGAACTGGCGGGCAAGAAGATGCCCAAGGTGGAGGACAGAGTAGCCCCGCTCAAAACTCTAATACAAACGCTG
GAATGAACACTTCTTCTACCCCAGCTTATGATGGCAATGACAGCGATGCAGATGATTTACCATTTTAA
Similar proteins
Only experimentally validated proteins are listed.
| Protein | Organism | Identities (%) | Coverage (%) | Ha-value |
|---|---|---|---|---|
| ssb | Glaesserella parasuis strain SC1401 |
41.667 |
100 |
0.484 |
| ssb | Vibrio cholerae strain A1552 |
40.462 |
100 |
0.452 |
| ssb | Neisseria meningitidis MC58 |
37.209 |
100 |
0.413 |
| ssb | Neisseria gonorrhoeae MS11 |
37.209 |
100 |
0.413 |