Detailed information
Bioinformatically predicted
Overview
| Name | clpC | Type | Regulator |
| Locus tag | BSM4216_RS00505 | Genome accession | NZ_CP012024 |
| Coordinates | 105943..108387 (+) | Length | 814 a.a. |
| NCBI ID | WP_048622357.1 | Uniprot ID | - |
| Organism | Bacillus smithii strain DSM 4216 | ||
| Function | degradation of ComK; degradation of DegU (predicted from homology) Competence regulation |
||
Genomic Context
Location: 100943..113387
| Locus tag | Gene name | Coordinates (strand) | Size (bp) | Protein ID | Product | Description |
|---|---|---|---|---|---|---|
| BSM4216_RS00490 (BSM4216_0105) | - | 103835..104296 (+) | 462 | WP_003354819.1 | CtsR family transcriptional regulator | - |
| BSM4216_RS00495 (BSM4216_0106) | - | 104313..104867 (+) | 555 | WP_003354818.1 | UvrB/UvrC motif-containing protein | - |
| BSM4216_RS00500 (BSM4216_0107) | - | 104857..105927 (+) | 1071 | WP_048622356.1 | protein arginine kinase | - |
| BSM4216_RS00505 (BSM4216_0108) | clpC | 105943..108387 (+) | 2445 | WP_048622357.1 | ATP-dependent protease ATP-binding subunit ClpC | Regulator |
| BSM4216_RS00510 (BSM4216_0109) | radA | 108742..110115 (+) | 1374 | WP_048622358.1 | DNA repair protein RadA | Machinery gene |
| BSM4216_RS00515 (BSM4216_0110) | disA | 110119..111186 (+) | 1068 | WP_003354814.1 | DNA integrity scanning diadenylate cyclase DisA | - |
| BSM4216_RS00520 (BSM4216_0111) | - | 111387..112472 (+) | 1086 | WP_048624343.1 | PIN/TRAM domain-containing protein | - |
| BSM4216_RS00525 (BSM4216_0112) | ispD | 112495..113184 (+) | 690 | WP_048622359.1 | 2-C-methyl-D-erythritol 4-phosphate cytidylyltransferase | - |
Sequence
Protein
Download Length: 814 a.a. Molecular weight: 90798.69 Da Isoelectric Point: 6.1252
>NTDB_id=150486 BSM4216_RS00505 WP_048622357.1 105943..108387(+) (clpC) [Bacillus smithii strain DSM 4216]
MMFGRFTERAQKVLALAQEEAIRLGHNNIGTEHILLGLVREGEGIAAKALYGLGLSPEKIQNEVENLIGKGQGVAQTIHY
TPRAKKVIELSMDEARKLGHSYVGTEHILLGLIREGEGVAARVLNNLGISLNKARQQVLQLLGSNETNGHASGSSAHANT
PTLDSLARDLTAIARDGKLDPVIGRSKEIQRVIEVLSRRTKNNPVLIGEPGVGKTAIAEGLAQQIVNNEVPETLRDKRVM
TLDMGTVVAGTKYRGEFEDRLKKVMDEIRQAGNIILFIDELHTLIGAGGAEGAIDASNILKPALARGELQCIGATTLDEY
RKYIEKDAALERRFQPIQVDEPTIEESIQILKGLRDRYEAHHRVSITDEAIEAAVKLSDRYISDRFLPDKAIDLIDEAGS
KVRLRSFTTPPNLKELEQKLEEIRKEKDAAVQSQEFEKAASLRDAEQKLREQLEETKKSWKEKQGKENSEVTVEDIATVV
SSWTGIPVSKLAQTETERLLNLEEILHSRVIGQEEAVKAVAKAVRRARAGLKDPKRPIGSFIFLGPTGVGKTELARALAE
AMFGDEDAMIRIDMSEYMEKHSTSRLVGSPPGYVGFEEGGQLTEKVRRKPYSVILLDEIEKAHPDVFNILLQVLEDGRLT
DSKGRTVDFRNTVLIMTSNVGAEALKKNKYVGFNIQDGEQEFKDMKGKVLEELKRAFRPEFLNRIDEIIVFHSLEKDQLK
QIVSLMSDQLTKRLKEQHIELELTDKAKEKIAEEGYDPEYGARPLRRAIQKHIEDRLSEELLKGNIHPGQNVVIDVENNE
FVVKTKQPSIGVME
MMFGRFTERAQKVLALAQEEAIRLGHNNIGTEHILLGLVREGEGIAAKALYGLGLSPEKIQNEVENLIGKGQGVAQTIHY
TPRAKKVIELSMDEARKLGHSYVGTEHILLGLIREGEGVAARVLNNLGISLNKARQQVLQLLGSNETNGHASGSSAHANT
PTLDSLARDLTAIARDGKLDPVIGRSKEIQRVIEVLSRRTKNNPVLIGEPGVGKTAIAEGLAQQIVNNEVPETLRDKRVM
TLDMGTVVAGTKYRGEFEDRLKKVMDEIRQAGNIILFIDELHTLIGAGGAEGAIDASNILKPALARGELQCIGATTLDEY
RKYIEKDAALERRFQPIQVDEPTIEESIQILKGLRDRYEAHHRVSITDEAIEAAVKLSDRYISDRFLPDKAIDLIDEAGS
KVRLRSFTTPPNLKELEQKLEEIRKEKDAAVQSQEFEKAASLRDAEQKLREQLEETKKSWKEKQGKENSEVTVEDIATVV
SSWTGIPVSKLAQTETERLLNLEEILHSRVIGQEEAVKAVAKAVRRARAGLKDPKRPIGSFIFLGPTGVGKTELARALAE
AMFGDEDAMIRIDMSEYMEKHSTSRLVGSPPGYVGFEEGGQLTEKVRRKPYSVILLDEIEKAHPDVFNILLQVLEDGRLT
DSKGRTVDFRNTVLIMTSNVGAEALKKNKYVGFNIQDGEQEFKDMKGKVLEELKRAFRPEFLNRIDEIIVFHSLEKDQLK
QIVSLMSDQLTKRLKEQHIELELTDKAKEKIAEEGYDPEYGARPLRRAIQKHIEDRLSEELLKGNIHPGQNVVIDVENNE
FVVKTKQPSIGVME
Nucleotide
Download Length: 2445 bp
>NTDB_id=150486 BSM4216_RS00505 WP_048622357.1 105943..108387(+) (clpC) [Bacillus smithii strain DSM 4216]
ATGATGTTTGGGAGATTTACCGAAAGGGCTCAGAAAGTTCTGGCATTAGCTCAAGAAGAGGCAATCCGTCTTGGACACAA
TAATATCGGAACCGAGCATATTTTATTAGGGTTGGTAAGGGAAGGCGAAGGAATTGCGGCGAAGGCTCTTTACGGTTTAG
GTTTGAGCCCTGAAAAAATTCAGAATGAAGTGGAGAATTTAATTGGGAAAGGCCAAGGAGTCGCCCAAACCATTCATTAT
ACGCCAAGGGCTAAAAAAGTAATTGAGCTTTCAATGGATGAAGCCAGAAAACTGGGACATTCTTATGTTGGTACCGAGCA
TATTTTACTCGGGTTGATCCGAGAAGGCGAAGGTGTTGCAGCCCGCGTATTGAACAATTTAGGAATTAGTTTAAATAAAG
CTCGTCAACAAGTGCTGCAGCTTTTAGGAAGCAATGAAACGAATGGGCATGCATCAGGATCGTCCGCCCATGCCAATACG
CCGACATTGGATAGCTTGGCTAGAGATTTGACAGCTATTGCTCGCGACGGAAAACTTGATCCTGTGATCGGACGTAGTAA
AGAAATTCAACGTGTGATTGAAGTGTTAAGCCGCAGAACGAAAAACAATCCAGTATTGATTGGTGAACCGGGTGTTGGGA
AAACAGCCATTGCGGAAGGATTAGCCCAACAAATTGTCAATAATGAAGTGCCGGAAACTCTTCGTGATAAACGAGTTATG
ACATTGGATATGGGGACCGTTGTAGCTGGAACGAAATATCGAGGAGAATTTGAAGACCGTTTGAAAAAAGTCATGGATGA
AATCCGGCAAGCTGGAAATATTATTTTGTTTATCGACGAGCTTCATACTTTGATCGGTGCGGGAGGAGCAGAAGGCGCCA
TTGACGCATCCAATATATTGAAGCCGGCATTGGCAAGAGGCGAGTTGCAATGCATTGGAGCAACAACATTAGATGAATAT
CGCAAATATATCGAAAAAGATGCTGCTTTGGAAAGACGCTTTCAGCCTATTCAAGTAGATGAACCGACCATTGAAGAATC
GATTCAAATTTTAAAAGGGCTAAGAGATCGCTACGAAGCACATCACCGTGTATCCATTACAGATGAGGCGATTGAAGCGG
CGGTTAAATTATCGGATCGTTATATTTCGGATCGTTTCTTGCCGGATAAAGCGATTGACCTTATTGATGAAGCAGGCTCG
AAAGTAAGATTACGCTCCTTTACCACTCCTCCGAATTTAAAAGAACTGGAGCAAAAACTTGAAGAAATTAGAAAAGAAAA
AGATGCAGCTGTACAAAGCCAAGAATTTGAAAAAGCAGCTTCTTTAAGAGACGCTGAGCAAAAATTGCGCGAGCAGTTGG
AAGAAACGAAAAAATCTTGGAAAGAAAAACAAGGAAAAGAAAACAGCGAAGTGACGGTTGAAGATATTGCGACAGTTGTT
TCCAGCTGGACAGGAATTCCTGTTTCCAAATTGGCACAAACTGAAACAGAAAGATTGTTAAATCTTGAAGAAATTCTACA
TTCGCGGGTCATTGGCCAGGAAGAAGCTGTAAAAGCGGTGGCTAAAGCTGTTCGTCGTGCACGGGCAGGATTAAAAGATC
CAAAACGTCCAATCGGCTCCTTTATTTTCCTCGGACCGACCGGAGTTGGGAAAACAGAGCTGGCTAGAGCATTGGCGGAA
GCTATGTTTGGCGATGAAGATGCTATGATCCGAATCGATATGTCAGAATACATGGAGAAACATTCGACTTCCCGTTTAGT
TGGCTCTCCTCCTGGTTATGTCGGATTTGAGGAAGGCGGACAATTGACAGAAAAGGTTAGACGCAAGCCGTATTCTGTTA
TATTGCTAGACGAAATTGAAAAAGCGCATCCGGATGTTTTCAACATTCTTCTTCAAGTATTAGAAGATGGCCGTTTAACT
GATTCAAAAGGTAGAACGGTTGACTTCCGGAATACAGTTCTGATAATGACGTCCAATGTGGGCGCTGAAGCGTTGAAGAA
AAACAAGTATGTTGGATTTAATATTCAGGACGGCGAGCAGGAATTTAAAGATATGAAAGGGAAAGTGCTGGAAGAACTCA
AAAGAGCATTTCGTCCTGAATTTTTAAATCGAATTGACGAAATTATTGTGTTCCATTCGTTGGAAAAAGATCAATTGAAA
CAGATTGTTTCGTTAATGTCTGATCAATTAACCAAACGTTTGAAAGAGCAGCATATTGAGCTTGAACTGACCGATAAAGC
AAAAGAGAAAATTGCCGAAGAAGGATACGATCCTGAATATGGAGCTCGTCCGTTGCGTCGGGCGATCCAGAAACATATTG
AAGATCGGCTGTCGGAAGAACTTTTAAAAGGCAATATCCATCCAGGACAAAATGTCGTGATTGACGTGGAAAATAACGAA
TTCGTAGTAAAAACAAAACAACCGTCAATTGGAGTAATGGAATGA
ATGATGTTTGGGAGATTTACCGAAAGGGCTCAGAAAGTTCTGGCATTAGCTCAAGAAGAGGCAATCCGTCTTGGACACAA
TAATATCGGAACCGAGCATATTTTATTAGGGTTGGTAAGGGAAGGCGAAGGAATTGCGGCGAAGGCTCTTTACGGTTTAG
GTTTGAGCCCTGAAAAAATTCAGAATGAAGTGGAGAATTTAATTGGGAAAGGCCAAGGAGTCGCCCAAACCATTCATTAT
ACGCCAAGGGCTAAAAAAGTAATTGAGCTTTCAATGGATGAAGCCAGAAAACTGGGACATTCTTATGTTGGTACCGAGCA
TATTTTACTCGGGTTGATCCGAGAAGGCGAAGGTGTTGCAGCCCGCGTATTGAACAATTTAGGAATTAGTTTAAATAAAG
CTCGTCAACAAGTGCTGCAGCTTTTAGGAAGCAATGAAACGAATGGGCATGCATCAGGATCGTCCGCCCATGCCAATACG
CCGACATTGGATAGCTTGGCTAGAGATTTGACAGCTATTGCTCGCGACGGAAAACTTGATCCTGTGATCGGACGTAGTAA
AGAAATTCAACGTGTGATTGAAGTGTTAAGCCGCAGAACGAAAAACAATCCAGTATTGATTGGTGAACCGGGTGTTGGGA
AAACAGCCATTGCGGAAGGATTAGCCCAACAAATTGTCAATAATGAAGTGCCGGAAACTCTTCGTGATAAACGAGTTATG
ACATTGGATATGGGGACCGTTGTAGCTGGAACGAAATATCGAGGAGAATTTGAAGACCGTTTGAAAAAAGTCATGGATGA
AATCCGGCAAGCTGGAAATATTATTTTGTTTATCGACGAGCTTCATACTTTGATCGGTGCGGGAGGAGCAGAAGGCGCCA
TTGACGCATCCAATATATTGAAGCCGGCATTGGCAAGAGGCGAGTTGCAATGCATTGGAGCAACAACATTAGATGAATAT
CGCAAATATATCGAAAAAGATGCTGCTTTGGAAAGACGCTTTCAGCCTATTCAAGTAGATGAACCGACCATTGAAGAATC
GATTCAAATTTTAAAAGGGCTAAGAGATCGCTACGAAGCACATCACCGTGTATCCATTACAGATGAGGCGATTGAAGCGG
CGGTTAAATTATCGGATCGTTATATTTCGGATCGTTTCTTGCCGGATAAAGCGATTGACCTTATTGATGAAGCAGGCTCG
AAAGTAAGATTACGCTCCTTTACCACTCCTCCGAATTTAAAAGAACTGGAGCAAAAACTTGAAGAAATTAGAAAAGAAAA
AGATGCAGCTGTACAAAGCCAAGAATTTGAAAAAGCAGCTTCTTTAAGAGACGCTGAGCAAAAATTGCGCGAGCAGTTGG
AAGAAACGAAAAAATCTTGGAAAGAAAAACAAGGAAAAGAAAACAGCGAAGTGACGGTTGAAGATATTGCGACAGTTGTT
TCCAGCTGGACAGGAATTCCTGTTTCCAAATTGGCACAAACTGAAACAGAAAGATTGTTAAATCTTGAAGAAATTCTACA
TTCGCGGGTCATTGGCCAGGAAGAAGCTGTAAAAGCGGTGGCTAAAGCTGTTCGTCGTGCACGGGCAGGATTAAAAGATC
CAAAACGTCCAATCGGCTCCTTTATTTTCCTCGGACCGACCGGAGTTGGGAAAACAGAGCTGGCTAGAGCATTGGCGGAA
GCTATGTTTGGCGATGAAGATGCTATGATCCGAATCGATATGTCAGAATACATGGAGAAACATTCGACTTCCCGTTTAGT
TGGCTCTCCTCCTGGTTATGTCGGATTTGAGGAAGGCGGACAATTGACAGAAAAGGTTAGACGCAAGCCGTATTCTGTTA
TATTGCTAGACGAAATTGAAAAAGCGCATCCGGATGTTTTCAACATTCTTCTTCAAGTATTAGAAGATGGCCGTTTAACT
GATTCAAAAGGTAGAACGGTTGACTTCCGGAATACAGTTCTGATAATGACGTCCAATGTGGGCGCTGAAGCGTTGAAGAA
AAACAAGTATGTTGGATTTAATATTCAGGACGGCGAGCAGGAATTTAAAGATATGAAAGGGAAAGTGCTGGAAGAACTCA
AAAGAGCATTTCGTCCTGAATTTTTAAATCGAATTGACGAAATTATTGTGTTCCATTCGTTGGAAAAAGATCAATTGAAA
CAGATTGTTTCGTTAATGTCTGATCAATTAACCAAACGTTTGAAAGAGCAGCATATTGAGCTTGAACTGACCGATAAAGC
AAAAGAGAAAATTGCCGAAGAAGGATACGATCCTGAATATGGAGCTCGTCCGTTGCGTCGGGCGATCCAGAAACATATTG
AAGATCGGCTGTCGGAAGAACTTTTAAAAGGCAATATCCATCCAGGACAAAATGTCGTGATTGACGTGGAAAATAACGAA
TTCGTAGTAAAAACAAAACAACCGTCAATTGGAGTAATGGAATGA
3D structure
| Source | ID | Structure |
|---|
Similar proteins
Only experimentally validated proteins are listed.
| Protein | Organism | Identities (%) | Coverage (%) | Ha-value |
|---|---|---|---|---|
| clpC | Bacillus subtilis subsp. subtilis str. 168 |
88.696 |
98.894 |
0.877 |
| clpC | Lactococcus lactis subsp. lactis strain DGCC12653 |
50.556 |
99.386 |
0.502 |
| clpC | Streptococcus thermophilus LMD-9 |
46.394 |
100 |
0.474 |
| clpC | Streptococcus thermophilus LMG 18311 |
46.154 |
100 |
0.472 |
| clpC | Streptococcus mutans UA159 |
44.922 |
100 |
0.462 |
| clpC | Streptococcus pneumoniae D39 |
46.23 |
99.386 |
0.459 |
| clpC | Streptococcus pneumoniae Rx1 |
46.23 |
99.386 |
0.459 |
| clpC | Streptococcus pneumoniae TIGR4 |
46.106 |
99.386 |
0.458 |
| clpE | Streptococcus mutans UA159 |
56.414 |
79.484 |
0.448 |
| clpE | Streptococcus pneumoniae Rx1 |
55.975 |
78.133 |
0.437 |
| clpE | Streptococcus pneumoniae D39 |
55.975 |
78.133 |
0.437 |
| clpE | Streptococcus pneumoniae R6 |
55.975 |
78.133 |
0.437 |
| clpC | Lactococcus lactis subsp. cremoris KW2 |
49.441 |
87.961 |
0.435 |
| clpE | Streptococcus pneumoniae TIGR4 |
56.661 |
76.536 |
0.434 |
| clpA | Campylobacter jejuni subsp. jejuni NCTC 11168 = ATCC 700819 |
37.189 |
98.771 |
0.367 |