Detailed information
Bioinformatically predicted
Overview
| Name | pilA/pilAI | Type | Machinery gene |
| Locus tag | AXW93_RS24835 | Genome accession | NZ_CP014866 |
| Coordinates | 5225844..5226308 (-) | Length | 154 a.a. |
| NCBI ID | WP_043103599.1 | Uniprot ID | - |
| Organism | Pseudomonas aeruginosa strain PA_154197 | ||
| Function | assembly of type IV pilus (predicted from homology) DNA binding and uptake |
||
Genomic Context
Location: 5220844..5231308
| Locus tag | Gene name | Coordinates (strand) | Size (bp) | Protein ID | Product | Description |
|---|---|---|---|---|---|---|
| AXW93_RS24820 (AXW93_24040) | nadC | 5223344..5224192 (+) | 849 | WP_080911812.1 | carboxylating nicotinate-nucleotide diphosphorylase | - |
| AXW93_RS24830 (AXW93_24050) | - | 5224373..5225686 (-) | 1314 | WP_231296149.1 | O-antigen ligase family protein | - |
| AXW93_RS24835 (AXW93_24055) | pilA/pilAI | 5225844..5226308 (-) | 465 | WP_043103599.1 | pilin | Machinery gene |
| AXW93_RS24840 (AXW93_24060) | pilB | 5226539..5228239 (+) | 1701 | WP_058161256.1 | type IV-A pilus assembly ATPase PilB | Machinery gene |
| AXW93_RS24845 (AXW93_24065) | pilC | 5228243..5229460 (+) | 1218 | WP_003107299.1 | type II secretion system F family protein | Machinery gene |
| AXW93_RS24850 (AXW93_24070) | pilD | 5229461..5230333 (+) | 873 | WP_080911813.1 | type IV prepilin peptidase/methyltransferase PilD | Machinery gene |
| AXW93_RS24855 (AXW93_24075) | coaE | 5230330..5230941 (+) | 612 | WP_003112838.1 | dephospho-CoA kinase | - |
| AXW93_RS24860 (AXW93_24080) | yacG | 5230938..5231138 (+) | 201 | WP_019486072.1 | DNA gyrase inhibitor YacG | - |
Sequence
Protein
Download Length: 154 a.a. Molecular weight: 15938.36 Da Isoelectric Point: 8.4578
>NTDB_id=150476 AXW93_RS24835 WP_043103599.1 5225844..5226308(-) (pilA/pilAI) [Pseudomonas aeruginosa strain PA_154197]
MKAQKGFTLIELMIVVAIIGILAAIAIPQYQDYTARTQVTRAVSEISALKTAAESAILEGKKLVSADTPGDGEYDLGFTE
STLLDKKGKAQITILKPSDADPSISGTLGGSAGKAIAGAVITIKRSPEGVWTCGITGSPANWKANYAPANCPKS
MKAQKGFTLIELMIVVAIIGILAAIAIPQYQDYTARTQVTRAVSEISALKTAAESAILEGKKLVSADTPGDGEYDLGFTE
STLLDKKGKAQITILKPSDADPSISGTLGGSAGKAIAGAVITIKRSPEGVWTCGITGSPANWKANYAPANCPKS
Nucleotide
Download Length: 465 bp
>NTDB_id=150476 AXW93_RS24835 WP_043103599.1 5225844..5226308(-) (pilA/pilAI) [Pseudomonas aeruginosa strain PA_154197]
ATGAAAGCTCAGAAGGGTTTTACTCTGATCGAACTGATGATCGTGGTCGCGATCATCGGCATCCTGGCCGCCATTGCCAT
CCCGCAATACCAGGACTACACCGCCCGTACCCAGGTGACCCGTGCCGTGAGTGAAATCAGCGCGCTGAAGACCGCTGCGG
AGTCGGCGATTCTGGAAGGCAAGAAGCTTGTATCCGCAGATACTCCCGGCGATGGTGAGTATGATCTTGGCTTTACTGAG
TCTACCTTGCTGGATAAGAAAGGTAAGGCGCAGATCACTATCTTGAAGCCGTCGGATGCTGATCCGTCAATTTCGGGTAC
TCTCGGCGGATCCGCTGGTAAGGCTATCGCTGGTGCAGTCATCACTATCAAGCGCAGTCCTGAGGGAGTGTGGACTTGCG
GTATCACTGGCTCGCCGGCCAACTGGAAAGCCAACTACGCTCCGGCCAATTGCCCGAAATCCTAA
ATGAAAGCTCAGAAGGGTTTTACTCTGATCGAACTGATGATCGTGGTCGCGATCATCGGCATCCTGGCCGCCATTGCCAT
CCCGCAATACCAGGACTACACCGCCCGTACCCAGGTGACCCGTGCCGTGAGTGAAATCAGCGCGCTGAAGACCGCTGCGG
AGTCGGCGATTCTGGAAGGCAAGAAGCTTGTATCCGCAGATACTCCCGGCGATGGTGAGTATGATCTTGGCTTTACTGAG
TCTACCTTGCTGGATAAGAAAGGTAAGGCGCAGATCACTATCTTGAAGCCGTCGGATGCTGATCCGTCAATTTCGGGTAC
TCTCGGCGGATCCGCTGGTAAGGCTATCGCTGGTGCAGTCATCACTATCAAGCGCAGTCCTGAGGGAGTGTGGACTTGCG
GTATCACTGGCTCGCCGGCCAACTGGAAAGCCAACTACGCTCCGGCCAATTGCCCGAAATCCTAA
3D structure
| Source | ID | Structure |
|---|
Similar proteins
Only experimentally validated proteins are listed.
| Protein | Organism | Identities (%) | Coverage (%) | Ha-value |
|---|---|---|---|---|
| pilA/pilAI | Pseudomonas stutzeri DSM 10701 |
46.154 |
100 |
0.468 |
| pilA | Pseudomonas aeruginosa PAK |
42.5 |
100 |
0.442 |
| pilA | Acinetobacter baumannii strain A118 |
47.368 |
86.364 |
0.409 |
| pilA | Ralstonia pseudosolanacearum GMI1000 |
36.471 |
100 |
0.403 |
| pilA | Vibrio cholerae O1 biovar El Tor strain E7946 |
43.972 |
91.558 |
0.403 |
| pilA | Vibrio cholerae strain A1552 |
43.972 |
91.558 |
0.403 |
| pilA | Vibrio cholerae C6706 |
43.972 |
91.558 |
0.403 |
| pilA/pilAII | Pseudomonas stutzeri DSM 10701 |
40.268 |
96.753 |
0.39 |