Detailed information    

insolico Bioinformatically predicted

Overview

Name   ssb   Type   Machinery gene
Locus tag   IMCC12053_RS02490 Genome accession   NZ_CP012023
Coordinates   524565..525104 (+) Length   179 a.a.
NCBI ID   WP_062215439.1    Uniprot ID   A0A0N7HI79
Organism   Celeribacter marinus strain IMCC12053     
Function   ssDNA binding (predicted from homology)   
DNA processing

Genomic Context

Location: 519565..530104
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  IMCC12053_RS02465 (IMCC12053_515) - 519808..520878 (+) 1071 WP_062215430.1 Hint domain-containing protein -
  IMCC12053_RS02470 (IMCC12053_516) pyrH 520871..521608 (-) 738 WP_062215432.1 UMP kinase -
  IMCC12053_RS02475 (IMCC12053_517) miaA 521758..522642 (+) 885 WP_062215434.1 tRNA (adenosine(37)-N6)-dimethylallyltransferase MiaA -
  IMCC12053_RS02480 (IMCC12053_518) - 522798..523742 (+) 945 WP_236852512.1 helix-turn-helix domain-containing protein -
  IMCC12053_RS02485 (IMCC12053_519) - 523787..524389 (-) 603 WP_062215438.1 lytic transglycosylase domain-containing protein -
  IMCC12053_RS02490 (IMCC12053_520) ssb 524565..525104 (+) 540 WP_062215439.1 single-stranded DNA-binding protein Machinery gene
  IMCC12053_RS02495 (IMCC12053_521) - 525221..527560 (-) 2340 WP_062215441.1 methyl-accepting chemotaxis protein -
  IMCC12053_RS02500 (IMCC12053_522) aroB 527702..528841 (-) 1140 WP_062215443.1 3-dehydroquinate synthase -
  IMCC12053_RS02505 (IMCC12053_523) - 528838..529449 (-) 612 WP_082389017.1 shikimate kinase -
  IMCC12053_RS02510 (IMCC12053_524) - 529613..529750 (+) 138 WP_169775296.1 hypothetical protein -

Sequence

Protein


Download         Length: 179 a.a.        Molecular weight: 18815.41 Da        Isoelectric Point: 5.0578

>NTDB_id=150476 IMCC12053_RS02490 WP_062215439.1 524565..525104(+) (ssb) [Celeribacter marinus strain IMCC12053]
MAGSVNKVIIVGNLGRDPEVRTFQNGGKVCNLRIATSENWKDRTTGERKERTEWHSVAIFSEPLAKIAEQYLRKGSKVYI
EGQLETRKWQDQSGQDRYSTEVVLRPYRGELTLLDARGGEGGGGGGYGGGSQGGGGGYDQGPSGGYDDGGQGGGYGGGSQ
GGGQSGGGRSSMDDDEIPF

Nucleotide


Download         Length: 540 bp        

>NTDB_id=150476 IMCC12053_RS02490 WP_062215439.1 524565..525104(+) (ssb) [Celeribacter marinus strain IMCC12053]
ATGGCTGGTTCGGTCAATAAAGTGATCATCGTTGGCAACTTGGGGCGCGACCCTGAGGTGCGTACATTCCAAAACGGCGG
CAAAGTCTGCAACCTGCGCATTGCCACATCCGAGAACTGGAAAGACCGCACAACGGGCGAGCGCAAAGAGCGCACCGAGT
GGCATTCTGTTGCTATTTTCTCAGAACCTTTGGCCAAGATCGCAGAACAATATCTGCGCAAAGGATCCAAGGTCTACATC
GAAGGCCAACTTGAAACCCGCAAATGGCAAGACCAATCCGGTCAGGACCGCTATTCGACCGAGGTCGTGTTGCGCCCTTA
CCGTGGCGAGTTGACCCTGCTTGACGCGCGCGGCGGCGAAGGCGGCGGCGGTGGTGGTTACGGTGGCGGATCACAAGGCG
GCGGTGGCGGCTACGACCAAGGGCCATCAGGCGGTTATGATGATGGCGGCCAAGGTGGTGGATACGGCGGCGGATCACAA
GGTGGCGGTCAAAGTGGCGGTGGTCGCTCATCCATGGATGATGACGAAATCCCGTTCTAA

Domains

Predicted by InterproScan.

Single-strand binding protein family (SSB)

(5-105)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A0A0N7HI79

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  ssb Glaesserella parasuis strain SC1401

48.969

100

0.531
  ssb Vibrio cholerae strain A1552

51.685

99.441

0.514
  ssb Neisseria gonorrhoeae MS11

37.989

100

0.38
  ssb Neisseria meningitidis MC58

37.989

100

0.38

Multiple sequence alignment