Detailed information    

insolico Bioinformatically predicted

Overview

Name   ssb   Type   Machinery gene
Locus tag   ACJ67_RS14000 Genome accession   NZ_CP012020
Coordinates   2977804..2978328 (-) Length   174 a.a.
NCBI ID   WP_018987282.1    Uniprot ID   A0A0K0SYK7
Organism   Methylophilus sp. TWE2     
Function   ssDNA binding (predicted from homology)   
DNA processing

Related MGE

Note: This gene co-localizes with putative mobile genetic elements (MGEs) in the genome predicted by VRprofile2, as detailed below.

Gene-MGE association summary

MGE type MGE coordinates Gene coordinates Relative position Distance (bp)
Genomic island 2944684..2977601 2977804..2978328 flank 203


Gene organization within MGE regions


Location: 2944684..2978328
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  ACJ67_RS13885 (ACJ67_13885) - 2944684..2946021 (-) 1338 WP_049639574.1 ATP-binding protein -
  ACJ67_RS13890 (ACJ67_13890) - 2946022..2946723 (-) 702 WP_197080628.1 response regulator transcription factor -
  ACJ67_RS13895 (ACJ67_13895) - 2946793..2948115 (+) 1323 WP_049639575.1 TolC family protein -
  ACJ67_RS13900 (ACJ67_13900) - 2948126..2949307 (+) 1182 WP_082164066.1 efflux RND transporter periplasmic adaptor subunit -
  ACJ67_RS13905 (ACJ67_13905) - 2949321..2952380 (+) 3060 WP_197080629.1 efflux RND transporter permease subunit -
  ACJ67_RS13910 (ACJ67_13910) - 2952841..2956836 (-) 3996 WP_049639577.1 DUF4365 domain-containing protein -
  ACJ67_RS13915 (ACJ67_13915) - 2957038..2958885 (-) 1848 WP_197080630.1 ATP-binding protein -
  ACJ67_RS13920 (ACJ67_13920) - 2959265..2959720 (+) 456 WP_049639579.1 LexA family transcriptional regulator -
  ACJ67_RS13925 (ACJ67_13925) - 2959698..2960990 (+) 1293 WP_231587200.1 Y-family DNA polymerase -
  ACJ67_RS13930 (ACJ67_13930) - 2961025..2961300 (-) 276 WP_049639581.1 helix-turn-helix domain-containing protein -
  ACJ67_RS13935 (ACJ67_13935) - 2961388..2961843 (+) 456 WP_049639582.1 hypothetical protein -
  ACJ67_RS14745 - 2961857..2962066 (+) 210 WP_082164068.1 MbcA/ParS/Xre antitoxin family protein -
  ACJ67_RS13940 (ACJ67_13940) - 2962148..2962387 (-) 240 WP_049639583.1 hypothetical protein -
  ACJ67_RS15150 (ACJ67_13945) - 2962828..2963407 (-) 580 Protein_2773 LysR substrate-binding domain-containing protein -
  ACJ67_RS13950 (ACJ67_13950) - 2964008..2965393 (-) 1386 WP_369799092.1 multicopper oxidase family protein -
  ACJ67_RS13955 (ACJ67_13955) - 2965404..2966783 (-) 1380 WP_049639585.1 TolC family protein -
  ACJ67_RS13960 (ACJ67_13960) - 2966773..2968041 (-) 1269 WP_082164070.1 DUF2231 domain-containing protein -
  ACJ67_RS13965 (ACJ67_13965) cueR 2968614..2969018 (-) 405 WP_049639587.1 Cu(I)-responsive transcriptional regulator -
  ACJ67_RS13970 (ACJ67_13970) - 2969080..2969274 (-) 195 WP_049639588.1 heavy-metal-associated domain-containing protein -
  ACJ67_RS13975 (ACJ67_13975) - 2969351..2971852 (-) 2502 WP_369799093.1 copper-translocating P-type ATPase -
  ACJ67_RS15155 - 2971964..2972113 (-) 150 WP_082164072.1 MbcA/ParS/Xre antitoxin family protein -
  ACJ67_RS13980 (ACJ67_13980) - 2972260..2972691 (-) 432 WP_053092907.1 hypothetical protein -
  ACJ67_RS13985 (ACJ67_13985) - 2972684..2974750 (-) 2067 WP_049639589.1 hypothetical protein -
  ACJ67_RS13990 (ACJ67_13990) - 2974743..2976308 (-) 1566 WP_049639590.1 site-specific integrase -
  ACJ67_RS13995 (ACJ67_13995) - 2976309..2977649 (-) 1341 WP_049639591.1 site-specific integrase -
  ACJ67_RS14000 (ACJ67_14000) ssb 2977804..2978328 (-) 525 WP_018987282.1 single-stranded DNA-binding protein Machinery gene

Sequence

Protein


Download         Length: 174 a.a.        Molecular weight: 19185.32 Da        Isoelectric Point: 4.8663

>NTDB_id=150432 ACJ67_RS14000 WP_018987282.1 2977804..2978328(-) (ssb) [Methylophilus sp. TWE2]
MASVNKVILMGNLGRDPEVRYMPNGEAVANFSIATTENWKDKSGVRQEKTEWHNIVMYRRLAEIAGEYLKKGRPVYIEGR
LQTRKWEKDGVTRYSTEIVADQMQMLGTGREGGSTAFDGGDMDQGGGMDDYNQAPPRQQPAMGGGNAGANRNAFQPAASK
PAGNFDDFDDDIPF

Nucleotide


Download         Length: 525 bp        

>NTDB_id=150432 ACJ67_RS14000 WP_018987282.1 2977804..2978328(-) (ssb) [Methylophilus sp. TWE2]
ATGGCATCAGTCAACAAAGTGATTTTGATGGGTAATCTGGGGCGTGACCCAGAAGTGCGCTATATGCCAAACGGTGAGGC
AGTGGCTAACTTCAGCATCGCCACCACCGAAAACTGGAAAGACAAATCCGGCGTGCGCCAGGAAAAAACCGAATGGCATA
ACATTGTCATGTATCGCCGCTTGGCAGAGATCGCTGGCGAATACCTGAAAAAAGGCCGCCCAGTATATATTGAGGGGCGT
CTGCAAACCCGCAAATGGGAAAAAGATGGTGTCACCCGCTACAGCACCGAAATCGTCGCAGACCAAATGCAAATGTTAGG
CACTGGCCGTGAAGGTGGAAGTACAGCATTTGATGGTGGCGACATGGACCAGGGTGGTGGCATGGATGATTACAACCAGG
CCCCTCCACGCCAGCAGCCAGCGATGGGCGGTGGAAATGCCGGTGCTAACCGGAATGCTTTCCAGCCAGCCGCGAGTAAG
CCGGCCGGTAATTTTGATGATTTTGACGACGATATTCCCTTCTGA

Domains

Predicted by InterproScan.

Single-strand binding protein family (SSB)

(4-106)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A0A0K0SYK7

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  ssb Vibrio cholerae strain A1552

51.913

100

0.546
  ssb Neisseria gonorrhoeae MS11

53.371

100

0.546
  ssb Neisseria meningitidis MC58

52.809

100

0.54
  ssb Glaesserella parasuis strain SC1401

49.198

100

0.529

Multiple sequence alignment