Detailed information    

insolico Bioinformatically predicted

Overview

Name   lpp1977   Type   Machinery gene
Locus tag   lpt_RS09815 Genome accession   NZ_CP012019
Coordinates   2215728..2216534 (-) Length   268 a.a.
NCBI ID   WP_061638310.1    Uniprot ID   -
Organism   Legionella pneumophila subsp. pneumophila strain Toronto-20052     
Function   DNA uptake (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 2210728..2221534
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  lpt_RS09790 (lpt_09775) - 2211168..2211818 (-) 651 WP_013101629.1 lysoplasmalogenase -
  lpt_RS09795 (lpt_09780) - 2211898..2212398 (-) 501 WP_011214243.1 hypothetical protein -
  lpt_RS09800 (lpt_09785) - 2212890..2213750 (+) 861 WP_011215957.1 polysaccharide deacetylase family protein -
  lpt_RS09805 (lpt_09790) - 2213868..2215064 (-) 1197 WP_011214245.1 murein transglycosylase A -
  lpt_RS09810 (lpt_09795) lpp1976 2215174..2215731 (-) 558 WP_027220531.1 hypothetical protein Machinery gene
  lpt_RS09815 (lpt_09800) lpp1977 2215728..2216534 (-) 807 WP_061638310.1 PilW family protein Machinery gene
  lpt_RS09820 (lpt_09805) lpp1978 2216473..2216787 (-) 315 WP_061638309.1 prepilin-type N-terminal cleavage/methylation domain-containing protein Machinery gene
  lpt_RS09825 (lpt_09810) hisC 2216947..2218056 (+) 1110 WP_027220534.1 histidinol-phosphate transaminase -
  lpt_RS09830 (lpt_09815) - 2218093..2218434 (+) 342 WP_010947715.1 4a-hydroxytetrahydrobiopterin dehydratase -
  lpt_RS09840 (lpt_09825) secF 2218612..2219529 (-) 918 WP_027220536.1 protein translocase subunit SecF -
  lpt_RS09845 (lpt_09830) secD 2219542..2221398 (-) 1857 WP_061638307.1 protein translocase subunit SecD -

Sequence

Protein


Download         Length: 268 a.a.        Molecular weight: 31444.66 Da        Isoelectric Point: 9.8676

>NTDB_id=150399 lpt_RS09815 WP_061638310.1 2215728..2216534(-) (lpp1977) [Legionella pneumophila subsp. pneumophila strain Toronto-20052]
MLRGLKKASQLFAPMIWVLIEMGRQTGFSLSEMLISLFLASIITITLTQFYIRSKPQYLKAQERLEINFDLLWIGDLLRD
SIRKAGFTPCVSVEKLKTFDSRHAERKIINFQIENMPQVQLRINRMSDVYTEVTNFMSPTQIVIEESVISNIKHPLIISD
CRQGEVHTVSKIDKLSNGYQITLKKPLRFRYNEIAYLGEWLEETWFTKQNEKGEKTLHYKLFQTEELSPFIHEFYVTRRL
IKQRSVLDFAIGSDKETLRKISVSVRNL

Nucleotide


Download         Length: 807 bp        

>NTDB_id=150399 lpt_RS09815 WP_061638310.1 2215728..2216534(-) (lpp1977) [Legionella pneumophila subsp. pneumophila strain Toronto-20052]
ATATTACGTGGTTTAAAAAAAGCCAGTCAATTATTCGCTCCTATGATCTGGGTGCTAATTGAAATGGGAAGACAAACAGG
ATTTAGTTTATCTGAGATGCTAATTAGTCTTTTTCTGGCAAGTATTATAACGATAACCCTTACTCAGTTTTATATAAGAA
GCAAGCCTCAATACCTAAAGGCACAAGAACGGTTAGAAATTAATTTTGATTTGCTGTGGATTGGTGATTTACTAAGAGAC
AGTATTAGAAAGGCTGGATTTACTCCATGCGTAAGTGTCGAAAAATTAAAAACTTTTGATTCTCGACATGCAGAGAGGAA
GATAATTAATTTTCAAATTGAAAATATGCCACAAGTTCAACTTCGTATTAACAGAATGAGTGATGTTTATACCGAAGTGA
CAAATTTTATGAGCCCAACACAAATAGTGATTGAAGAGTCAGTAATATCAAATATAAAACACCCATTAATTATTTCTGAT
TGCCGGCAAGGAGAAGTACATACAGTTTCAAAAATAGATAAACTAAGCAATGGATATCAAATTACTTTAAAAAAACCACT
GCGGTTCCGGTACAACGAAATTGCTTACTTGGGAGAGTGGCTTGAAGAAACATGGTTTACTAAACAAAATGAAAAGGGTG
AAAAGACATTACATTACAAACTGTTTCAAACAGAAGAATTAAGTCCATTCATTCATGAATTTTATGTTACCAGACGTCTT
ATCAAACAGAGGTCAGTATTGGATTTTGCAATTGGTAGCGATAAGGAAACGCTACGTAAAATCAGTGTTTCGGTACGAAA
TTTATGA

Domains


No domain identified.



Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  lpp1977 Legionella pneumophila str. Paris

98.881

100

0.989
  lpp1977 Legionella pneumophila strain ERS1305867

98.134

100

0.981

Multiple sequence alignment