Detailed information
Bioinformatically predicted
Overview
| Name | lpp1978 | Type | Machinery gene |
| Locus tag | lpt_RS09820 | Genome accession | NZ_CP012019 |
| Coordinates | 2216473..2216787 (-) | Length | 104 a.a. |
| NCBI ID | WP_061638309.1 | Uniprot ID | - |
| Organism | Legionella pneumophila subsp. pneumophila strain Toronto-20052 | ||
| Function | DNA uptake (predicted from homology) DNA binding and uptake |
||
Genomic Context
Location: 2211473..2221787
| Locus tag | Gene name | Coordinates (strand) | Size (bp) | Protein ID | Product | Description |
|---|---|---|---|---|---|---|
| lpt_RS09795 (lpt_09780) | - | 2211898..2212398 (-) | 501 | WP_011214243.1 | hypothetical protein | - |
| lpt_RS09800 (lpt_09785) | - | 2212890..2213750 (+) | 861 | WP_011215957.1 | polysaccharide deacetylase family protein | - |
| lpt_RS09805 (lpt_09790) | - | 2213868..2215064 (-) | 1197 | WP_011214245.1 | murein transglycosylase A | - |
| lpt_RS09810 (lpt_09795) | lpp1976 | 2215174..2215731 (-) | 558 | WP_027220531.1 | hypothetical protein | Machinery gene |
| lpt_RS09815 (lpt_09800) | lpp1977 | 2215728..2216534 (-) | 807 | WP_061638310.1 | PilW family protein | Machinery gene |
| lpt_RS09820 (lpt_09805) | lpp1978 | 2216473..2216787 (-) | 315 | WP_061638309.1 | prepilin-type N-terminal cleavage/methylation domain-containing protein | Machinery gene |
| lpt_RS09825 (lpt_09810) | hisC | 2216947..2218056 (+) | 1110 | WP_027220534.1 | histidinol-phosphate transaminase | - |
| lpt_RS09830 (lpt_09815) | - | 2218093..2218434 (+) | 342 | WP_010947715.1 | 4a-hydroxytetrahydrobiopterin dehydratase | - |
| lpt_RS09840 (lpt_09825) | secF | 2218612..2219529 (-) | 918 | WP_027220536.1 | protein translocase subunit SecF | - |
| lpt_RS09845 (lpt_09830) | secD | 2219542..2221398 (-) | 1857 | WP_061638307.1 | protein translocase subunit SecD | - |
| lpt_RS09850 (lpt_09835) | yajC | 2221420..2221755 (-) | 336 | WP_010947718.1 | preprotein translocase subunit YajC | - |
Sequence
Protein
Download Length: 104 a.a. Molecular weight: 12263.42 Da Isoelectric Point: 10.0591
>NTDB_id=150400 lpt_RS09820 WP_061638309.1 2216473..2216787(-) (lpp1978) [Legionella pneumophila subsp. pneumophila strain Toronto-20052]
MSKHKGFTLMEVLVSLMLMTTVVLMLVEQQLKTRDLINHLIWRIQGSQYLDQVDEALYISENRLPLPPSNYHFDIRRSQK
KIILNITWFKKSQSIIRSYDLGAN
MSKHKGFTLMEVLVSLMLMTTVVLMLVEQQLKTRDLINHLIWRIQGSQYLDQVDEALYISENRLPLPPSNYHFDIRRSQK
KIILNITWFKKSQSIIRSYDLGAN
Nucleotide
Download Length: 315 bp
>NTDB_id=150400 lpt_RS09820 WP_061638309.1 2216473..2216787(-) (lpp1978) [Legionella pneumophila subsp. pneumophila strain Toronto-20052]
ATGAGCAAGCATAAGGGTTTCACTCTAATGGAAGTACTTGTGTCATTAATGCTAATGACAACGGTAGTTCTGATGTTAGT
GGAACAACAGTTGAAAACCAGAGATCTAATCAATCATCTTATCTGGCGAATCCAAGGTTCCCAATATCTAGATCAAGTAG
ATGAAGCATTATATATTAGTGAGAATAGACTCCCTCTGCCGCCTTCAAATTATCATTTTGATATCAGGCGATCTCAAAAG
AAAATCATTTTGAATATTACGTGGTTTAAAAAAAGCCAGTCAATTATTCGCTCCTATGATCTGGGTGCTAATTGA
ATGAGCAAGCATAAGGGTTTCACTCTAATGGAAGTACTTGTGTCATTAATGCTAATGACAACGGTAGTTCTGATGTTAGT
GGAACAACAGTTGAAAACCAGAGATCTAATCAATCATCTTATCTGGCGAATCCAAGGTTCCCAATATCTAGATCAAGTAG
ATGAAGCATTATATATTAGTGAGAATAGACTCCCTCTGCCGCCTTCAAATTATCATTTTGATATCAGGCGATCTCAAAAG
AAAATCATTTTGAATATTACGTGGTTTAAAAAAAGCCAGTCAATTATTCGCTCCTATGATCTGGGTGCTAATTGA
3D structure
| Source | ID | Structure |
|---|
Similar proteins
Only experimentally validated proteins are listed.
| Protein | Organism | Identities (%) | Coverage (%) | Ha-value |
|---|---|---|---|---|
| lpp1978 | Legionella pneumophila strain ERS1305867 |
99.038 |
100 |
0.99 |
| lpp1978 | Legionella pneumophila str. Paris |
97.115 |
100 |
0.971 |