Detailed information    

insolico Bioinformatically predicted

Overview

Name   comM   Type   Machinery gene
Locus tag   AC028_RS02480 Genome accession   NZ_CP012002
Coordinates   561544..562602 (-) Length   352 a.a.
NCBI ID   WP_042676130.1    Uniprot ID   -
Organism   Xanthomonas citri pv. aurantifolii strain 1566     
Function   assembly of type IV pilus (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 556544..567602
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  AC028_RS02460 (AC028_02335) - 557601..559550 (-) 1950 WP_007967618.1 type IV pilus secretin PilQ family protein -
  AC028_RS02465 (AC028_02340) - 559570..560103 (-) 534 WP_003486179.1 pilus assembly protein PilP -
  AC028_RS02470 (AC028_02345) - 560100..560765 (-) 666 WP_007967621.1 type 4a pilus biogenesis protein PilO -
  AC028_RS02475 (AC028_02350) - 560762..561544 (-) 783 WP_007967624.1 PilN domain-containing protein -
  AC028_RS02480 (AC028_02355) comM 561544..562602 (-) 1059 WP_042676130.1 pilus assembly protein PilM Machinery gene
  AC028_RS02485 (AC028_02360) - 562815..565241 (+) 2427 WP_007967628.1 penicillin-binding protein 1A -
  AC028_RS02490 (AC028_02365) - 565542..566192 (+) 651 WP_042676131.1 hypothetical protein -

Sequence

Protein


Download         Length: 352 a.a.        Molecular weight: 37622.25 Da        Isoelectric Point: 4.3924

>NTDB_id=150036 AC028_RS02480 WP_042676130.1 561544..562602(-) (comM) [Xanthomonas citri pv. aurantifolii strain 1566]
MGLLPKSQSPLIGVDISSTAVKLLQLSRSGNRFRVEHYAVEPLPPNAVVEKNIVEVEAVGEAIRRAINRSGSKAKNAAAA
VAGSAVITKLIPMPADLDDSDLEAQVELEATNYIPYPIEEVNLDFEVLGPMPNSLDMVQVLLAASRSENVELRQSALELG
GLTAKVMDVEAFAVENAFALVASELPVAADAVVALVDIGATMTTLSVLRSGRSLYSREQVFGGKQLTDEVMRRYGLTYEE
AGLAKRQGGLPESYEVEVLEPFKEATVQQISRLLQFFYAGSEFNRVDCIVLAGGCAALARLPEMVEEQLGVTTVVANPLA
QMTLGPKVQAHALALDAPALMIATGLALRSFD

Nucleotide


Download         Length: 1059 bp        

>NTDB_id=150036 AC028_RS02480 WP_042676130.1 561544..562602(-) (comM) [Xanthomonas citri pv. aurantifolii strain 1566]
GTGGGGCTTTTACCCAAGAGTCAGTCGCCACTGATTGGTGTCGACATTAGTTCGACTGCCGTGAAGCTCTTGCAGCTATC
GCGCAGCGGGAACCGTTTCCGCGTGGAACATTACGCGGTAGAACCATTGCCGCCGAATGCGGTCGTGGAAAAGAACATCG
TCGAAGTGGAAGCGGTGGGCGAAGCCATTCGCCGCGCCATCAACCGTTCCGGCAGCAAGGCCAAGAACGCGGCAGCTGCT
GTGGCAGGGTCGGCGGTGATCACCAAGTTGATCCCGATGCCGGCCGATCTGGACGATAGCGACCTGGAGGCCCAGGTCGA
ACTGGAAGCCACCAATTACATTCCGTACCCGATCGAGGAAGTGAATCTCGATTTCGAGGTGCTGGGCCCGATGCCCAATA
GCCTGGACATGGTGCAGGTGCTGCTGGCCGCCTCGCGTTCGGAGAATGTGGAACTGCGCCAGTCGGCGCTGGAACTCGGC
GGCCTGACCGCCAAGGTAATGGACGTGGAGGCCTTTGCGGTCGAAAACGCCTTCGCCCTGGTTGCCAGCGAATTGCCGGT
GGCCGCCGATGCGGTGGTGGCGCTGGTGGATATCGGCGCGACCATGACCACGCTGAGCGTGCTGCGCTCCGGTCGCAGTC
TGTATAGCCGCGAGCAGGTGTTCGGCGGCAAGCAGCTCACTGACGAAGTGATGCGCCGTTATGGACTGACCTACGAAGAG
GCTGGCCTTGCCAAGCGCCAGGGCGGCCTGCCGGAAAGCTACGAGGTCGAAGTGCTGGAGCCGTTCAAGGAAGCCACGGT
GCAGCAGATCAGCCGTCTGCTGCAGTTCTTCTATGCGGGCAGTGAGTTCAACCGCGTCGACTGCATCGTGCTGGCCGGCG
GTTGCGCCGCGCTGGCGCGCCTGCCGGAGATGGTGGAAGAGCAGCTCGGTGTGACCACGGTCGTTGCAAATCCGCTTGCC
CAGATGACGCTTGGCCCGAAGGTTCAGGCCCATGCGCTGGCGCTGGATGCGCCTGCACTGATGATCGCCACCGGCCTGGC
CCTGAGGAGCTTCGACTGA

Domains

Predicted by InterproScan.

Type IV pilus assembly protein PilM; (PilM_2)

(13-351)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comM Acinetobacter nosocomialis M2

50.986

100

0.514
  comM Acinetobacter baylyi ADP1

50.997

99.716

0.509
  pilM Acinetobacter baumannii D1279779

50.568

100

0.506
  pilM Legionella pneumophila strain ERS1305867

47.293

99.716

0.472

Multiple sequence alignment