Detailed information
Bioinformatically predicted
Overview
| Name | ssb | Type | Machinery gene |
| Locus tag | IYO_RS02895 | Genome accession | NZ_CP011972 |
| Coordinates | 595797..596366 (+) | Length | 189 a.a. |
| NCBI ID | WP_003426596.1 | Uniprot ID | A0A0K8M6E3 |
| Organism | Pseudomonas syringae pv. actinidiae ICMP 18884 | ||
| Function | ssDNA binding (predicted from homology) DNA processing |
||
Genomic Context
Location: 590797..601366
| Locus tag | Gene name | Coordinates (strand) | Size (bp) | Protein ID | Product | Description |
|---|---|---|---|---|---|---|
| IYO_RS02880 (IYO_002880) | bfr | 590871..591335 (+) | 465 | WP_004397024.1 | bacterioferritin | - |
| IYO_RS02885 (IYO_002885) | uvrA | 591429..594263 (-) | 2835 | WP_005614297.1 | excinuclease ABC subunit UvrA | - |
| IYO_RS02890 (IYO_002890) | - | 594393..595787 (+) | 1395 | WP_004397022.1 | MFS transporter | - |
| IYO_RS02895 (IYO_002895) | ssb | 595797..596366 (+) | 570 | WP_003426596.1 | single-stranded DNA-binding protein | Machinery gene |
| IYO_RS02900 (IYO_002900) | - | 596590..596889 (-) | 300 | WP_003379193.1 | hypothetical protein | - |
| IYO_RS02905 (IYO_002905) | - | 597012..597755 (-) | 744 | WP_003379192.1 | inositol monophosphatase family protein | - |
| IYO_RS02910 (IYO_002910) | - | 597752..598513 (-) | 762 | WP_003379189.1 | glycerophosphoryl diester phosphodiesterase | - |
| IYO_RS02915 (IYO_002915) | ugpC | 598520..599626 (-) | 1107 | WP_003379187.1 | sn-glycerol-3-phosphate ABC transporter ATP-binding protein UgpC | - |
| IYO_RS02920 (IYO_002920) | - | 599623..600516 (-) | 894 | WP_003379184.1 | ABC transporter permease subunit | - |
Sequence
Protein
Download Length: 189 a.a. Molecular weight: 20974.10 Da Isoelectric Point: 5.9404
>NTDB_id=149785 IYO_RS02895 WP_003426596.1 595797..596366(+) (ssb) [Pseudomonas syringae pv. actinidiae ICMP 18884]
MARGVNKVILVGTCGQDPEVRYLPNGNAVTNLSLATSEQWTDKQSGQKVEKTEWHRVSMFGKVAEIAGEYLRKGSQVYIE
GKLQTREWEKDGIKRYTTEIVVDMQGTMQLLGGRPQGDAQQGQGGGGNYNQSAPRPQQSRPQQSAPQQSAPQQNYNQQPP
QQRDSRPAPQQQAPQPAADFDSFDDDIPF
MARGVNKVILVGTCGQDPEVRYLPNGNAVTNLSLATSEQWTDKQSGQKVEKTEWHRVSMFGKVAEIAGEYLRKGSQVYIE
GKLQTREWEKDGIKRYTTEIVVDMQGTMQLLGGRPQGDAQQGQGGGGNYNQSAPRPQQSRPQQSAPQQSAPQQNYNQQPP
QQRDSRPAPQQQAPQPAADFDSFDDDIPF
Nucleotide
Download Length: 570 bp
>NTDB_id=149785 IYO_RS02895 WP_003426596.1 595797..596366(+) (ssb) [Pseudomonas syringae pv. actinidiae ICMP 18884]
ATGGCCCGTGGGGTTAACAAAGTCATATTGGTCGGTACATGCGGCCAGGATCCCGAAGTTCGCTACTTGCCTAACGGTAA
CGCCGTGACCAACCTGAGTCTGGCAACCAGCGAACAATGGACTGACAAGCAGAGCGGCCAGAAGGTCGAGAAGACCGAGT
GGCACCGTGTTTCGATGTTCGGCAAGGTTGCCGAAATCGCCGGCGAATACCTGCGCAAGGGTTCGCAGGTCTACATCGAA
GGCAAGCTGCAGACCCGCGAGTGGGAAAAAGACGGCATCAAGCGCTACACCACTGAAATCGTCGTCGACATGCAAGGCAC
CATGCAACTGCTGGGCGGCCGTCCACAGGGCGACGCTCAACAAGGTCAGGGCGGTGGCGGCAACTACAACCAGTCTGCAC
CTCGTCCACAGCAGTCGCGCCCACAGCAATCGGCGCCGCAGCAATCTGCCCCTCAGCAGAACTACAACCAGCAGCCGCCA
CAACAGCGCGATTCGCGCCCAGCGCCGCAACAACAAGCGCCGCAGCCTGCTGCTGACTTTGACAGCTTTGATGACGATAT
TCCGTTCTAG
ATGGCCCGTGGGGTTAACAAAGTCATATTGGTCGGTACATGCGGCCAGGATCCCGAAGTTCGCTACTTGCCTAACGGTAA
CGCCGTGACCAACCTGAGTCTGGCAACCAGCGAACAATGGACTGACAAGCAGAGCGGCCAGAAGGTCGAGAAGACCGAGT
GGCACCGTGTTTCGATGTTCGGCAAGGTTGCCGAAATCGCCGGCGAATACCTGCGCAAGGGTTCGCAGGTCTACATCGAA
GGCAAGCTGCAGACCCGCGAGTGGGAAAAAGACGGCATCAAGCGCTACACCACTGAAATCGTCGTCGACATGCAAGGCAC
CATGCAACTGCTGGGCGGCCGTCCACAGGGCGACGCTCAACAAGGTCAGGGCGGTGGCGGCAACTACAACCAGTCTGCAC
CTCGTCCACAGCAGTCGCGCCCACAGCAATCGGCGCCGCAGCAATCTGCCCCTCAGCAGAACTACAACCAGCAGCCGCCA
CAACAGCGCGATTCGCGCCCAGCGCCGCAACAACAAGCGCCGCAGCCTGCTGCTGACTTTGACAGCTTTGATGACGATAT
TCCGTTCTAG
Similar proteins
Only experimentally validated proteins are listed.
| Protein | Organism | Identities (%) | Coverage (%) | Ha-value |
|---|---|---|---|---|
| ssb | Vibrio cholerae strain A1552 |
55.208 |
100 |
0.561 |
| ssb | Glaesserella parasuis strain SC1401 |
47.368 |
100 |
0.476 |
| ssb | Neisseria meningitidis MC58 |
44.681 |
99.471 |
0.444 |
| ssb | Neisseria gonorrhoeae MS11 |
44.681 |
99.471 |
0.444 |