Detailed information    

insolico Bioinformatically predicted

Overview

Name   ysxA/radC   Type   Machinery gene
Locus tag   A1R12_RS12790 Genome accession   NZ_CP014783
Coordinates   2685231..2685926 (-) Length   231 a.a.
NCBI ID   WP_061890750.1    Uniprot ID   -
Organism   Bacillus amyloliquefaciens strain B15     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 2680231..2690926
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  A1R12_RS12760 (A1R12_12760) - 2680246..2681049 (-) 804 WP_007408168.1 M23 family metallopeptidase -
  A1R12_RS12765 (A1R12_12765) minD 2681177..2681980 (-) 804 WP_060674730.1 septum site-determining protein MinD -
  A1R12_RS12770 (A1R12_12770) minC 2681983..2682663 (-) 681 WP_003152653.1 septum site-determining protein MinC -
  A1R12_RS12775 (A1R12_12775) mreD 2682717..2683235 (-) 519 WP_007408167.1 rod shape-determining protein MreD -
  A1R12_RS12780 (A1R12_12780) mreC 2683232..2684095 (-) 864 WP_015417925.1 rod shape-determining protein MreC -
  A1R12_RS12785 (A1R12_12785) mreB 2684126..2685139 (-) 1014 WP_003152647.1 cell shape-determining protein MreB -
  A1R12_RS12790 (A1R12_12790) ysxA/radC 2685231..2685926 (-) 696 WP_061890750.1 RadC family protein Machinery gene
  A1R12_RS12795 (A1R12_12795) - 2685958..2686527 (-) 570 WP_012118105.1 Maf family protein -
  A1R12_RS12800 (A1R12_12800) - 2686668..2687669 (-) 1002 WP_022552880.1 SPOR domain-containing protein -
  A1R12_RS12805 (A1R12_12805) comC 2687796..2688548 (-) 753 WP_022552879.1 prepilin peptidase Machinery gene
  A1R12_RS12810 (A1R12_12810) - 2688689..2689981 (-) 1293 WP_061890751.1 bifunctional folylpolyglutamate synthase/dihydrofolate synthase -

Sequence

Protein


Download         Length: 231 a.a.        Molecular weight: 26052.29 Da        Isoelectric Point: 9.1830

>NTDB_id=149705 A1R12_RS12790 WP_061890750.1 2685231..2685926(-) (ysxA/radC) [Bacillus amyloliquefaciens strain B15]
MIIRDLPLKLRDFPEKEKPRERLLHFGAEHLSNNELLAILLRTGTKHESVMNLAHRLLRTFDGLRLLKGASAQELSSIPG
IGTVKAVQILAAIELGSRIHKTSAGEHCVIRSPEDGAKYVMEDMRFLSQEHFVCLYLNTKNQVIHKRTVFIGSLNSSIVH
PREVFKEAFKRSAASFICVHNHPSGDPTPSKEDIEVTRRLFECGNLIGIELLDHLVIGDKKFVSLKEKGYL

Nucleotide


Download         Length: 696 bp        

>NTDB_id=149705 A1R12_RS12790 WP_061890750.1 2685231..2685926(-) (ysxA/radC) [Bacillus amyloliquefaciens strain B15]
TTGATCATCCGTGATCTGCCGTTAAAATTAAGAGATTTCCCCGAAAAAGAAAAACCGAGAGAGCGGCTTCTGCACTTCGG
AGCCGAACATCTCTCTAACAATGAATTGCTCGCCATCCTGCTGCGGACGGGAACGAAACATGAGTCCGTCATGAACCTCG
CTCACCGGCTGCTGCGGACGTTTGACGGGCTGCGACTGTTAAAAGGCGCCTCTGCCCAGGAGCTTTCCAGCATTCCGGGA
ATCGGCACGGTGAAAGCCGTTCAGATTCTTGCCGCAATTGAGCTGGGGAGCCGCATTCATAAGACATCCGCCGGGGAGCA
TTGCGTCATCCGCTCTCCGGAAGACGGGGCGAAGTATGTGATGGAGGATATGCGCTTTTTATCCCAGGAGCATTTTGTCT
GTTTATATTTAAATACCAAAAATCAAGTCATTCATAAACGCACCGTTTTTATCGGAAGTCTGAATTCATCTATTGTCCAC
CCGCGGGAGGTGTTTAAAGAAGCTTTCAAACGATCCGCCGCGTCCTTCATTTGCGTTCACAATCATCCTTCAGGAGATCC
TACACCGAGCAAGGAAGATATAGAGGTAACCAGGCGGCTTTTTGAGTGCGGAAATTTAATCGGCATCGAGCTGCTGGATC
ATTTGGTCATTGGTGACAAAAAATTTGTGAGTTTAAAGGAAAAAGGATATTTGTAA

Domains

Predicted by InterProScan.

RadC-like JAB domain (RadC)

(110-229)

UPF0758 N-terminal (UPF0758_N)

(11-87)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  ysxA/radC Bacillus subtilis subsp. subtilis str. 168

87.446

100

0.874
  radC Streptococcus pneumoniae TIGR4

49.524

90.909

0.45
  radC Streptococcus pneumoniae R6

49.048

90.909

0.446
  radC Streptococcus pneumoniae D39

49.048

90.909

0.446
  radC Streptococcus gordonii str. Challis substr. CH1

46.667

90.909

0.424