Detailed information    

insolico Bioinformatically predicted

Overview

Name   comM   Type   Machinery gene
Locus tag   ACU16_RS05200 Genome accession   NZ_CP011958
Coordinates   1195950..1197008 (+) Length   352 a.a.
NCBI ID   WP_033004977.1    Uniprot ID   -
Organism   Xanthomonas oryzae pv. oryzicola strain CFBP7331     
Function   assembly of type IV pilus (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 1190950..1202008
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  ACU16_RS05190 (ACU16_05195) - 1192339..1192989 (-) 651 WP_011407794.1 hypothetical protein -
  ACU16_RS05195 (ACU16_05200) - 1193305..1195734 (-) 2430 WP_048483949.1 penicillin-binding protein 1A -
  ACU16_RS05200 (ACU16_05205) comM 1195950..1197008 (+) 1059 WP_033004977.1 pilus assembly protein PilM Machinery gene
  ACU16_RS05205 (ACU16_05210) - 1197008..1197790 (+) 783 WP_044750904.1 PilN domain-containing protein -
  ACU16_RS05210 (ACU16_05215) - 1197787..1198452 (+) 666 WP_014504437.1 type 4a pilus biogenesis protein PilO -
  ACU16_RS05215 (ACU16_05220) - 1198449..1198982 (+) 534 WP_024712440.1 pilus assembly protein PilP -
  ACU16_RS05220 (ACU16_05225) - 1199002..1200948 (+) 1947 WP_024712441.1 type IV pilus secretin PilQ family protein -

Sequence

Protein


Download         Length: 352 a.a.        Molecular weight: 37650.33 Da        Isoelectric Point: 4.3882

>NTDB_id=149630 ACU16_RS05200 WP_033004977.1 1195950..1197008(+) (comM) [Xanthomonas oryzae pv. oryzicola strain CFBP7331]
MGLLPKSQSPLIGVDISSTAVKLLQLSRSGNRFRVEHYAVEPLPPNAVVEKNIVEVDAVGEAIRRAINRSGSKVKNAAAA
VAGSAVITKLIPMPADLDDSDMEAQVELEATNYIPYPIEEVNLDFEVVGPMPNIPDMVQVLLAASRSENVELRQSALELG
GLTAKVMDVEAFAVENAFALVASELPVAADAVVALVDIGATMTTLSVLRSGRSLYSREQVFGGKQLTDEVMRRYGLTYEE
AGLAKRQGGLPESYEVEVLEPFKEATVQQISRLLQFFYAGSEFNRVDCIVLAGGCAALARLPEMVEEQLGVTTVVANPLA
QMTLGPKVQAHALALDAPALMIATGLALRSFD

Nucleotide


Download         Length: 1059 bp        

>NTDB_id=149630 ACU16_RS05200 WP_033004977.1 1195950..1197008(+) (comM) [Xanthomonas oryzae pv. oryzicola strain CFBP7331]
GTGGGGCTTTTACCCAAGAGTCAGTCGCCACTGATTGGTGTCGACATTAGTTCTACTGCCGTGAAGCTCTTGCAGCTATC
GCGCAGCGGGAACCGTTTTCGCGTGGAACATTACGCCGTGGAACCGTTGCCGCCGAACGCGGTGGTGGAAAAGAACATCG
TCGAAGTGGATGCGGTGGGCGAAGCCATTCGCCGCGCCATCAACCGGTCCGGCAGCAAGGTCAAGAACGCGGCCGCGGCC
GTGGCTGGGTCGGCGGTGATCACCAAGTTGATCCCGATGCCGGCCGATCTGGACGATAGCGACATGGAGGCCCAGGTCGA
ACTGGAAGCCACCAATTACATTCCGTACCCGATCGAGGAAGTGAATCTCGATTTCGAGGTGGTGGGCCCGATGCCCAACA
TCCCGGATATGGTCCAGGTGCTGCTGGCCGCATCGCGTTCGGAGAATGTGGAACTGCGCCAGTCGGCGCTGGAACTCGGT
GGTCTGACTGCCAAAGTGATGGACGTGGAGGCCTTCGCGGTCGAAAACGCCTTCGCCCTGGTCGCCAGCGAATTGCCGGT
GGCCGCTGACGCAGTCGTGGCGCTGGTGGATATCGGCGCCACCATGACCACGCTGAGCGTGCTGCGTTCCGGTCGCAGTC
TGTATAGCCGCGAACAGGTGTTCGGCGGCAAGCAGCTCACCGATGAAGTGATGCGCCGTTACGGACTCACCTACGAAGAA
GCTGGCCTGGCCAAGCGTCAGGGCGGTCTGCCGGAAAGCTACGAGGTCGAGGTGCTGGAGCCGTTCAAGGAAGCCACGGT
GCAGCAGATCAGCCGGTTGCTGCAGTTCTTCTATGCAGGCAGCGAGTTCAATCGCGTCGACTGCATCGTGCTGGCCGGCG
GTTGCGCCGCGCTGGCGCGCCTGCCGGAGATGGTGGAAGAGCAACTGGGGGTCACCACAGTGGTCGCCAACCCGCTTGCC
CAGATGACGCTGGGTCCGAAAGTCCAGGCCCATGCGCTGGCGCTGGATGCGCCTGCATTGATGATCGCCACCGGCCTGGC
CCTGAGGAGCTTCGACTGA

Domains

Predicted by InterproScan.

Type IV pilus assembly protein PilM; (PilM_2)

(13-351)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comM Acinetobacter nosocomialis M2

50.568

100

0.506
  comM Acinetobacter baylyi ADP1

50.712

99.716

0.506
  pilM Acinetobacter baumannii D1279779

50.284

100

0.503
  pilM Legionella pneumophila strain ERS1305867

47.293

99.716

0.472

Multiple sequence alignment