Detailed information    

insolico Bioinformatically predicted

Overview

Name   ssb   Type   Machinery gene
Locus tag   ACP86_RS13225 Genome accession   NZ_CP011929
Coordinates   2853713..2854237 (+) Length   174 a.a.
NCBI ID   WP_008174919.1    Uniprot ID   G6YW08
Organism   Marinobacter sp. CP1     
Function   ssDNA binding (predicted from homology)   
DNA processing

Genomic Context

Location: 2848713..2859237
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  ACP86_RS13215 (ACP86_13210) uvrA 2849258..2852098 (-) 2841 WP_053114303.1 excinuclease ABC subunit UvrA -
  ACP86_RS13220 (ACP86_13215) - 2852285..2853655 (+) 1371 WP_053114306.1 MFS transporter -
  ACP86_RS13225 (ACP86_13220) ssb 2853713..2854237 (+) 525 WP_008174919.1 single-stranded DNA-binding protein Machinery gene
  ACP86_RS13230 (ACP86_13225) - 2855053..2856738 (+) 1686 WP_200905067.1 reverse transcriptase domain-containing protein -
  ACP86_RS13235 (ACP86_13230) - 2856796..2857224 (+) 429 WP_139216055.1 DUF6701 domain-containing protein -
  ACP86_RS13240 (ACP86_13235) ntrC 2857286..2858713 (-) 1428 WP_014575986.1 nitrogen regulation protein NR(I) -

Sequence

Protein


Download         Length: 174 a.a.        Molecular weight: 18985.02 Da        Isoelectric Point: 4.9464

>NTDB_id=149354 ACP86_RS13225 WP_008174919.1 2853713..2854237(+) (ssb) [Marinobacter sp. CP1]
MARGVNKVILIGNLGQDPDTRYTPNGNAVVNLNLATDESYKDRQTGQLVPKTEWHRVVMFGKIAEVAGQYLRKGSKVYIE
GKLQTRKWQNKEGQDVYTTEVVVDINGQMQMLDSRGGEGGMSQGAPAGRPQQSGYNAPAGQQNNPPPQSGGYSNQPSQGS
MPEPVDDFDDDIPF

Nucleotide


Download         Length: 525 bp        

>NTDB_id=149354 ACP86_RS13225 WP_008174919.1 2853713..2854237(+) (ssb) [Marinobacter sp. CP1]
ATGGCACGAGGCGTAAACAAGGTAATCCTAATCGGTAATCTGGGGCAGGACCCGGATACCCGCTACACCCCCAACGGCAA
TGCCGTAGTAAACCTGAACCTTGCAACAGACGAAAGCTACAAGGATCGTCAGACCGGTCAGCTGGTGCCGAAAACCGAAT
GGCACCGGGTTGTCATGTTCGGCAAGATCGCCGAAGTTGCGGGACAGTACCTGCGAAAGGGCTCAAAGGTTTATATTGAG
GGCAAGCTTCAGACCCGCAAATGGCAGAACAAGGAAGGGCAGGATGTCTATACCACCGAGGTTGTGGTGGATATCAATGG
CCAGATGCAGATGCTGGACAGCCGTGGCGGCGAAGGCGGAATGAGCCAGGGTGCGCCGGCAGGACGGCCTCAGCAGTCCG
GCTACAACGCGCCGGCTGGACAGCAGAACAATCCGCCACCGCAATCCGGTGGCTACAGCAACCAGCCTTCGCAGGGCAGC
ATGCCCGAACCGGTTGACGACTTTGATGATGACATCCCGTTCTGA

Domains

Predicted by InterproScan.

Single-strand binding protein family (SSB)

(5-112)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB G6YW08

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  ssb Vibrio cholerae strain A1552

56.831

100

0.598
  ssb Glaesserella parasuis strain SC1401

53.804

100

0.569
  ssb Neisseria gonorrhoeae MS11

44.693

100

0.46
  ssb Neisseria meningitidis MC58

44.134

100

0.454

Multiple sequence alignment