Detailed information    

insolico Bioinformatically predicted

Overview

Name   ruvB   Type   Machinery gene
Locus tag   A1D13_RS07955 Genome accession   NZ_CP014759
Coordinates   1722273..1723283 (-) Length   336 a.a.
NCBI ID   WP_011213854.1    Uniprot ID   Q5X4Y6
Organism   Legionella pneumophila strain F4468     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 1717273..1728283
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  A1D13_RS07925 (A1D13_07760) - 1717612..1718445 (-) 834 WP_014843885.1 S1/P1 nuclease -
  A1D13_RS07930 (A1D13_07765) tolB 1718448..1719707 (-) 1260 WP_014843886.1 Tol-Pal system beta propeller repeat protein TolB -
  A1D13_RS07935 (A1D13_07770) tolA 1719713..1720711 (-) 999 WP_014843887.1 cell envelope integrity protein TolA -
  A1D13_RS07940 (A1D13_07775) tolR 1720708..1721163 (-) 456 WP_010947302.1 protein TolR -
  A1D13_RS07945 (A1D13_07780) tolQ 1721172..1721849 (-) 678 WP_011946571.1 protein TolQ -
  A1D13_RS07950 (A1D13_07785) ybgC 1721874..1722269 (-) 396 WP_027225040.1 tol-pal system-associated acyl-CoA thioesterase -
  A1D13_RS07955 (A1D13_07790) ruvB 1722273..1723283 (-) 1011 WP_011213854.1 Holliday junction branch migration DNA helicase RuvB Machinery gene
  A1D13_RS07960 (A1D13_07795) - 1723430..1723993 (-) 564 WP_014843889.1 sigma-70 family RNA polymerase sigma factor -
  A1D13_RS07965 (A1D13_07800) - 1724094..1724537 (-) 444 WP_042235520.1 lpg1578 family Dot/Icm T4SS effector -
  A1D13_RS07970 (A1D13_07805) - 1724479..1724718 (-) 240 WP_011946576.1 succinate dehydrogenase assembly factor 2 -
  A1D13_RS07975 (A1D13_07810) - 1724844..1725833 (+) 990 WP_014843891.1 YgfZ/GcvT domain-containing protein -
  A1D13_RS07980 (A1D13_07815) - 1725864..1726412 (-) 549 WP_027225042.1 cytochrome b -

Sequence

Protein


Download         Length: 336 a.a.        Molecular weight: 37104.67 Da        Isoelectric Point: 5.4513

>NTDB_id=149349 A1D13_RS07955 WP_011213854.1 1722273..1723283(-) (ruvB) [Legionella pneumophila strain F4468]
MLESDRLISSQSIVSEDAMDRAIRPLSLSEYVGQDSVSSQMQIFINAARKRNDPLDHVLIFGPPGLGKTTLANIIAHEMG
VNIRQTSGPVIERAGDIAAILTNLQQNDVLFIDEIHRLSPVIEEILYPAMEDYKLDIMIGEGPAARSIKLELPPFTLIGA
TTRAGLLTSPLRDRFGIVQRLEYYSVDSLTKIVARSAHLLGVPTKPEGAREIALRSRGTPRIANRLLRRVRDYSEVKGNG
IITVDMAQQALEMLEVDQHGFDLMDRKLLLAVIEHFNGGPVGIDSIAAAIGEEKGTIEDVLEPFLIQQGFLMRTPRGRIA
TSKAYQHFGFSAIEQE

Nucleotide


Download         Length: 1011 bp        

>NTDB_id=149349 A1D13_RS07955 WP_011213854.1 1722273..1723283(-) (ruvB) [Legionella pneumophila strain F4468]
ATGCTCGAAAGTGATCGCCTAATAAGTAGTCAAAGTATTGTCTCGGAAGACGCAATGGATAGAGCCATCAGGCCGCTTAG
CTTGAGCGAGTACGTAGGGCAAGATTCTGTTAGCTCACAGATGCAGATATTTATCAATGCGGCAAGAAAGAGAAACGATC
CTTTGGATCATGTTCTTATTTTTGGCCCACCTGGCCTTGGTAAAACCACTCTGGCAAATATCATAGCTCACGAAATGGGA
GTGAATATCCGACAAACTTCTGGGCCAGTGATTGAGCGTGCTGGAGATATTGCTGCTATATTGACGAATCTACAACAAAA
TGATGTACTATTTATTGATGAAATTCATAGATTAAGTCCTGTTATAGAAGAAATTCTTTATCCAGCCATGGAAGATTATA
AGTTGGATATCATGATAGGAGAGGGGCCAGCAGCACGATCTATTAAATTGGAGTTACCTCCCTTTACATTAATTGGAGCA
ACGACGAGAGCAGGGTTGCTTACCTCGCCATTAAGAGATAGATTTGGTATAGTGCAACGTTTGGAATATTATTCTGTTGA
TTCGCTTACCAAGATTGTGGCACGCTCTGCGCATTTGCTTGGTGTCCCTACAAAACCCGAAGGAGCCAGAGAAATTGCAT
TACGCTCCAGAGGAACACCACGAATAGCCAATCGCCTGTTAAGAAGAGTCAGGGATTATTCTGAAGTGAAAGGAAATGGC
ATCATTACTGTTGATATGGCCCAACAAGCATTGGAAATGCTTGAAGTGGATCAGCACGGGTTTGATTTAATGGATAGAAA
ATTATTGTTAGCGGTGATAGAACACTTCAATGGTGGCCCAGTAGGCATAGATAGTATTGCAGCTGCTATTGGCGAAGAAA
AAGGGACTATAGAAGATGTTTTAGAGCCATTTTTAATACAACAAGGCTTTCTAATGCGCACTCCTCGCGGTAGAATAGCC
ACTTCGAAAGCTTATCAGCATTTTGGCTTTAGTGCGATCGAACAGGAATAA

Domains

Predicted by InterProScan.

RuvB C-terminal winged helix domain (WHD_RuvB)

(259-328)

RuvB AAA lid domain (AAA_lid_4)

(184-257)

Holliday junction DNA helicase RuvB P-loop domain (RuvB_N)

(23-181)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB Q5X4Y6

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  ruvB Bacillus subtilis subsp. subtilis str. 168

60.366

97.619

0.589
  ruvB Streptococcus pneumoniae TIGR4

56.667

98.214

0.557
  ruvB Streptococcus pneumoniae R6

56.667

98.214

0.557
  ruvB Streptococcus pneumoniae D39

56.667

98.214

0.557
  ruvB Helicobacter pylori 26695

52.795

95.833

0.506
  ruvB Synechocystis sp. PCC 6803

53.548

92.262

0.494