Detailed information    

insolico Bioinformatically predicted

Overview

Name   ssb   Type   Machinery gene
Locus tag   ACJ74_RS02220 Genome accession   NZ_CP011915
Coordinates   429763..430299 (-) Length   178 a.a.
NCBI ID   WP_000168305.1    Uniprot ID   A0A9P2PPK2
Organism   Escherichia coli strain PSUO2     
Function   ssDNA binding (predicted from homology)   
DNA processing

Genomic Context

Location: 424763..435299
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  ACJ74_RS02195 (ACJ74_02105) soxR 426492..426956 (-) 465 WP_000412431.1 redox-sensitive transcriptional activator SoxR -
  ACJ74_RS02200 (ACJ74_02110) soxS 427042..427365 (+) 324 WP_000019358.1 superoxide response transcriptional regulator SoxS -
  ACJ74_RS02205 (ACJ74_02115) pdeC 427401..428954 (-) 1554 WP_001350405.1 c-di-GMP phosphodiesterase PdeC -
  ACJ74_RS02215 (ACJ74_02120) yjcB 429383..429664 (+) 282 WP_001296643.1 YjcB family protein -
  ACJ74_RS02220 (ACJ74_02125) ssb 429763..430299 (-) 537 WP_000168305.1 single-stranded DNA-binding protein SSB1 Machinery gene
  ACJ74_RS02225 (ACJ74_02130) uvrA 430554..433376 (+) 2823 WP_000357763.1 excinuclease ABC subunit UvrA -
  ACJ74_RS02230 (ACJ74_02135) yjbR 433411..433767 (-) 357 WP_000155657.1 MmcQ/YjbR family DNA-binding protein -
  ACJ74_RS02235 (ACJ74_02140) yjbQ 433771..434187 (-) 417 WP_000270369.1 secondary thiamine-phosphate synthase enzyme YjbQ -
  ACJ74_RS02240 (ACJ74_02145) aphA 434298..435011 (-) 714 WP_001226933.1 acid phosphatase AphA -

Sequence

Protein


Download         Length: 178 a.a.        Molecular weight: 18975.00 Da        Isoelectric Point: 5.2358

>NTDB_id=149273 ACJ74_RS02220 WP_000168305.1 429763..430299(-) (ssb) [Escherichia coli strain PSUO2]
MASRGVNKVILVGNLGQDPEVRYMPNGGAVANITLATSESWRDKATGEMKEQTEWHRVVLFGKLAEVASEYLRKGSQVYI
EGQLRTRKWTDQSGQDRYTTEVVVNVGGTMQMLGGRQGGGAPAGGNIGGGQPQGGWGQPQQPQGGNQFSGGAQSRPQQSA
PAAPSNEPPMDFDDDIPF

Nucleotide


Download         Length: 537 bp        

>NTDB_id=149273 ACJ74_RS02220 WP_000168305.1 429763..430299(-) (ssb) [Escherichia coli strain PSUO2]
ATGGCCAGCAGAGGCGTAAACAAGGTTATTCTCGTTGGTAATCTGGGTCAGGACCCGGAAGTACGCTACATGCCAAATGG
TGGCGCAGTTGCCAACATTACGCTGGCTACTTCCGAATCCTGGCGTGATAAAGCCACCGGCGAGATGAAAGAGCAGACTG
AATGGCACCGCGTTGTGCTGTTCGGCAAACTGGCAGAAGTAGCCAGCGAATATCTGCGTAAAGGTTCTCAGGTTTATATC
GAAGGTCAGCTGCGTACCCGCAAATGGACCGATCAATCCGGTCAGGATCGCTACACCACAGAAGTCGTGGTGAACGTTGG
CGGCACCATGCAGATGCTGGGTGGTCGTCAGGGTGGTGGCGCTCCTGCAGGTGGCAATATCGGTGGTGGTCAGCCGCAGG
GCGGTTGGGGTCAGCCTCAGCAGCCGCAGGGTGGCAATCAGTTCAGCGGCGGCGCGCAGTCTCGCCCGCAGCAGTCCGCT
CCGGCAGCGCCGTCTAACGAGCCGCCGATGGACTTTGATGACGATATTCCGTTCTGA

Domains

Predicted by InterproScan.

Single-strand binding protein family (SSB)

(6-112)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  ssb Vibrio cholerae strain A1552

74.444

100

0.753
  ssb Glaesserella parasuis strain SC1401

57.923

100

0.596
  ssb Neisseria meningitidis MC58

48.066

100

0.489
  ssb Neisseria gonorrhoeae MS11

48.066

100

0.489

Multiple sequence alignment